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Dr. Disco (bam-extract) tool metadata

Miscellaneous

Name: Dr. Disco (bam-extract)

Description: Extracts reads from two targeted regions

Id: dr_disco_bam_extract

Guid: toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.14.0

Version: 0.14.0

Version command string: dr-disco --version | head -n 1

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.14.0 (this tool)

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.11.0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.10.0-g3

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.10.0-g2-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.10.0-g1-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.10.0-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.9.0-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.6.0-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.3.4-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_bam_extract/0.2.0-g0

dr_disco_bam_extract

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

dr-disco

0.14.0

package

Functional tests

name

inputs

outputs

required files

Test-1

input_alignment: bam_extract.bam
region1: chr21:39737183-40035618
region2: chr21:42834478-42882085

output: bam_extract.bam

bam_extract.bam

Test-2

input_alignment: bam_extract.bam
region1: chr22:39737183-40035618
region2: chr11:42834478-42882085

output: bam_extract.empty.bam

bam_extract.bam
bam_extract.empty.bam