Repository revision
11:3743fd602fa9

Repository 'dr_disco'
hg clone https://toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco

Dr. Disco (classify) tool metadata
Miscellaneous
Dr. Disco (classify)
Classifies detected break-points in RNA-seq based on corresponding statistics and blacklists
dr_disco_classify
toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.14.0
0.14.0
dr-disco --version | head -n 1
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.14.0 (this tool)
toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.11.0
toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.10.0-g3
toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.10.0-g2-g0
toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.10.0-g1-g0
toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.10.0-g0
toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_classify/0.9.0-g0
dr_disco_classify
Requirements (dependencies defined in the <requirements> tag set)
name version type
dr-disco 0.14.0 package
Additional information about this tool
dr-disco
            classify
            
                ${only_valid}
                
                #if $blacklist_regions:
                    --blacklist-regions '${blacklist_regions}'
                #end if

                #if $blacklist_junctions:
                    --blacklist-junctions '${blacklist_junctions}'
                #end if
                
                --min-chim-overhang '${min_chim_overhang}'
                
                '${dr_disco_detect_output}'
                '${dr_disco_classify_output}'
None
False
Functional tests
name inputs outputs required files
Test-1 only_valid: False
dr_disco_detect_output: classify_test_16.in.dbed
 dr_disco_classify_output: classify_test_16.test-01.out.dbed
 classify_test_16.in.dbed
classify_test_16.test-01.out.dbed
Test-2 only_valid: True
dr_disco_detect_output: classify_test_16.in.dbed
 dr_disco_classify_output: classify_test_16.test-02.out.dbed
 classify_test_16.in.dbed
classify_test_16.test-02.out.dbed
Test-3 blacklist_regions: blacklist-regions.hg38.bed
only_valid: False
dr_disco_detect_output: classify_test_16.in.dbed
 dr_disco_classify_output: classify_test_16.test-03.out.dbed
 classify_test_16.in.dbed
blacklist-regions.hg38.bed
classify_test_16.test-03.out.dbed
Test-4 blacklist_regions: blacklist-regions.hg38.bed
only_valid: False
dr_disco_detect_output: classify_test_16.in.dbed
 dr_disco_classify_output: classify_test_16.test-04.out.dbed
 classify_test_16.in.dbed
blacklist-regions.hg38.bed
classify_test_16.test-04.out.dbed
Test-5 blacklist_junctions: blacklist-junctions.hg38.txt
only_valid: False
dr_disco_detect_output: classify_test_16.in.dbed
 dr_disco_classify_output: classify_test_16.test-05.out.dbed
 classify_test_16.in.dbed
blacklist-junctions.hg38.txt
classify_test_16.test-05.out.dbed
Test-6 blacklist_junctions: blacklist-junctions.hg38.txt
only_valid: False
dr_disco_detect_output: classify_test_16.in.dbed
 dr_disco_classify_output: classify_test_16.test-06.out.dbed
 classify_test_16.in.dbed
blacklist-junctions.hg38.txt
classify_test_16.test-06.out.dbed
Test-7 blacklist_junctions: blacklist-junctions.hg38.txt
blacklist_regions: blacklist-regions.hg38.bed
only_valid: False
dr_disco_detect_output: classify_test_16.in.dbed
 dr_disco_classify_output: classify_test_16.test-07.out.dbed
 classify_test_16.in.dbed
blacklist-regions.hg38.bed
blacklist-junctions.hg38.txt
classify_test_16.test-07.out.dbed
Test-8 blacklist_junctions: blacklist-junctions.hg38.txt
blacklist_regions: blacklist-regions.hg38.bed
only_valid: False
dr_disco_detect_output: classify_test_16.in.dbed
 dr_disco_classify_output: classify_test_16.test-08.out.dbed
 classify_test_16.in.dbed
blacklist-regions.hg38.bed
blacklist-junctions.hg38.txt
classify_test_16.test-08.out.dbed