Repository revision

Revision: 11:3743fd602fa9

Repository 'dr_disco'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco

Dr. Disco (detect) tool metadata

Miscellaneous

Name: Dr. Disco (detect)

Description: Detects break-points in RNA-seq

Id: dr_disco_detect

Guid: toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_detect/0.14.0

Version: 0.14.0

Version command string: dr-disco --version | head -n 1

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_detect/0.14.0 (this tool)

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_detect/0.11.0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_detect/0.10.0-g3

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_detect/0.10.0-g2-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_detect/0.10.0-g1-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_detect/0.10.0-g0

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_detect/0.9.0-g0

dr_disco_detect

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

dr-disco

0.14.0

package

Additional information about this tool

Command:

dr-disco
            detect
                --min-e-score '${min_e_score}'
                '${star_discordant_alignment_fixed}'
                '${output_fusion_events}'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

min_e_score: 8
star_discordant_alignment_fixed: detect.bam

output_fusion_events: detect.txt

detect.bam
detect.txt