Repository revision

Revision: 11:3743fd602fa9

Repository 'dr_disco'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco

Dr. Disco (integrate) tool metadata

Miscellaneous

Name: Dr. Disco (integrate)

Description: Merges corresponding genomic breaks and exon-to-exon junctions

Id: dr_disco_integrate

Guid: toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_integrate/0.14.0

Version: 0.14.0

Version command string: dr-disco --version | head -n 1

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_integrate/0.14.0 (this tool)

toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/dr_disco/dr_disco_integrate/0.9.0-g0

dr_disco_integrate

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

dr-disco

0.14.0

package

Additional information about this tool

Command:

dr-disco
            integrate
                #if $gtf:
                    --gtf '${gtf}'
                #end if

                '${dr_disco_classify_output}'
                '${dr_disco_integrate_output}'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

dr_disco_classify_output: integrate_test_terg_s041.in.dbed
gtf: integrate_tmprss-erg.hg38.gtf

dr_disco_integrate_output: integrate_test_terg_s041.out.txt

integrate_test_terg_s041.in.dbed
integrate_tmprss-erg.hg38.gtf
integrate_test_terg_s041.out.txt

Test-2

dr_disco_classify_output: integrate_test_terg_s041.in.dbed

dr_disco_integrate_output: integrate_test_terg_s041.out.no-gtf.txt

integrate_test_terg_s041.in.dbed
integrate_test_terg_s041.out.no-gtf.txt