Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.8+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.6+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.3.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.2.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.1.0 |
MRMTransitionGroupPicker |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.6 | package |
openms-thirdparty | 2.6 | package |
blast | 2.9.0 | package |
ctdopts | 1.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in: MRMTransitionGroupPicker_1_input.mzML tr: MRMTransitionGroupPicker_1_input.TraML algorithm|stop_after_feature: -1 algorithm|stop_after_intensity_ratio: 0.0001 algorithm|min_peak_width: -1.0 algorithm|peak_integration: original algorithm|background_subtraction: none algorithm|recalculate_peaks: False algorithm|use_precursors: False algorithm|use_consensus: True algorithm|recalculate_peaks_max_z: 1.0 algorithm|minimal_quality: -10000.0 algorithm|resample_boundary: 15.0 algorithm|compute_peak_quality: False algorithm|compute_peak_shape_metrics: False algorithm|compute_total_mi: False algorithm|boundary_selection_method: largest algorithm|PeakPickerMRM|sgolay_frame_length: 15 algorithm|PeakPickerMRM|sgolay_polynomial_order: 3 algorithm|PeakPickerMRM|gauss_width: 50.0 algorithm|PeakPickerMRM|use_gauss: True algorithm|PeakPickerMRM|peak_width: 40.0 algorithm|PeakPickerMRM|signal_to_noise: 1.0 algorithm|PeakPickerMRM|sn_win_len: 1000.0 algorithm|PeakPickerMRM|sn_bin_count: 30 algorithm|PeakPickerMRM|write_sn_log_messages: False algorithm|PeakPickerMRM|remove_overlapping_peaks: True algorithm|PeakPickerMRM|method: legacy algorithm|PeakIntegrator|integration_type: intensity_sum algorithm|PeakIntegrator|baseline_type: base_to_base algorithm|PeakIntegrator|fit_EMG: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
MRMTransitionGroupPicker_1_input.mzML MRMTransitionGroupPicker_1_input.TraML value |
Test-2 |
in: MRMTransitionGroupPicker_1_input.mzML tr: MRMTransitionGroupPicker_1_input.TraML algorithm|stop_after_feature: -1 algorithm|stop_after_intensity_ratio: 0.0001 algorithm|min_peak_width: -1.0 algorithm|peak_integration: original algorithm|background_subtraction: none algorithm|recalculate_peaks: False algorithm|use_precursors: False algorithm|use_consensus: True algorithm|recalculate_peaks_max_z: 1.0 algorithm|minimal_quality: -10000.0 algorithm|resample_boundary: 15.0 algorithm|compute_peak_quality: False algorithm|compute_peak_shape_metrics: False algorithm|compute_total_mi: True algorithm|boundary_selection_method: largest algorithm|PeakPickerMRM|sgolay_frame_length: 15 algorithm|PeakPickerMRM|sgolay_polynomial_order: 3 algorithm|PeakPickerMRM|gauss_width: 50.0 algorithm|PeakPickerMRM|use_gauss: True algorithm|PeakPickerMRM|peak_width: 40.0 algorithm|PeakPickerMRM|signal_to_noise: 1.0 algorithm|PeakPickerMRM|sn_win_len: 1000.0 algorithm|PeakPickerMRM|sn_bin_count: 30 algorithm|PeakPickerMRM|write_sn_log_messages: False algorithm|PeakPickerMRM|remove_overlapping_peaks: True algorithm|PeakPickerMRM|method: legacy algorithm|PeakIntegrator|integration_type: intensity_sum algorithm|PeakIntegrator|baseline_type: base_to_base algorithm|PeakIntegrator|fit_EMG: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
MRMTransitionGroupPicker_1_input.mzML MRMTransitionGroupPicker_1_input.TraML value |