Repository revision
12:a93565208dba

Repository 'openms_mrmtransitiongrouppicker'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker

MRMTransitionGroupPicker tool metadata
Miscellaneous
Picks peaks in SRM/MRM chromatograms.
MRMTransitionGroupPicker
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.6+galaxy0
2.6+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.8+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.6+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mrmtransitiongrouppicker/MRMTransitionGroupPicker/2.1.0
MRMTransitionGroupPicker
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.6 package
openms-thirdparty 2.6 package
blast 2.9.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: MRMTransitionGroupPicker_1_input.mzML
tr: MRMTransitionGroupPicker_1_input.TraML
algorithm|stop_after_feature: -1
algorithm|stop_after_intensity_ratio: 0.0001
algorithm|min_peak_width: -1.0
algorithm|peak_integration: original
algorithm|background_subtraction: none
algorithm|recalculate_peaks: False
algorithm|use_precursors: False
algorithm|use_consensus: True
algorithm|recalculate_peaks_max_z: 1.0
algorithm|minimal_quality: -10000.0
algorithm|resample_boundary: 15.0
algorithm|compute_peak_quality: False
algorithm|compute_peak_shape_metrics: False
algorithm|compute_total_mi: False
algorithm|boundary_selection_method: largest
algorithm|PeakPickerMRM|sgolay_frame_length: 15
algorithm|PeakPickerMRM|sgolay_polynomial_order: 3
algorithm|PeakPickerMRM|gauss_width: 50.0
algorithm|PeakPickerMRM|use_gauss: True
algorithm|PeakPickerMRM|peak_width: 40.0
algorithm|PeakPickerMRM|signal_to_noise: 1.0
algorithm|PeakPickerMRM|sn_win_len: 1000.0
algorithm|PeakPickerMRM|sn_bin_count: 30
algorithm|PeakPickerMRM|write_sn_log_messages: False
algorithm|PeakPickerMRM|remove_overlapping_peaks: True
algorithm|PeakPickerMRM|method: legacy
algorithm|PeakIntegrator|integration_type: intensity_sum
algorithm|PeakIntegrator|baseline_type: base_to_base
algorithm|PeakIntegrator|fit_EMG: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
MRMTransitionGroupPicker_1_input.mzML
MRMTransitionGroupPicker_1_input.TraML
value
Test-2 in: MRMTransitionGroupPicker_1_input.mzML
tr: MRMTransitionGroupPicker_1_input.TraML
algorithm|stop_after_feature: -1
algorithm|stop_after_intensity_ratio: 0.0001
algorithm|min_peak_width: -1.0
algorithm|peak_integration: original
algorithm|background_subtraction: none
algorithm|recalculate_peaks: False
algorithm|use_precursors: False
algorithm|use_consensus: True
algorithm|recalculate_peaks_max_z: 1.0
algorithm|minimal_quality: -10000.0
algorithm|resample_boundary: 15.0
algorithm|compute_peak_quality: False
algorithm|compute_peak_shape_metrics: False
algorithm|compute_total_mi: True
algorithm|boundary_selection_method: largest
algorithm|PeakPickerMRM|sgolay_frame_length: 15
algorithm|PeakPickerMRM|sgolay_polynomial_order: 3
algorithm|PeakPickerMRM|gauss_width: 50.0
algorithm|PeakPickerMRM|use_gauss: True
algorithm|PeakPickerMRM|peak_width: 40.0
algorithm|PeakPickerMRM|signal_to_noise: 1.0
algorithm|PeakPickerMRM|sn_win_len: 1000.0
algorithm|PeakPickerMRM|sn_bin_count: 30
algorithm|PeakPickerMRM|write_sn_log_messages: False
algorithm|PeakPickerMRM|remove_overlapping_peaks: True
algorithm|PeakPickerMRM|method: legacy
algorithm|PeakIntegrator|integration_type: intensity_sum
algorithm|PeakIntegrator|baseline_type: base_to_base
algorithm|PeakIntegrator|fit_EMG: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
MRMTransitionGroupPicker_1_input.mzML
MRMTransitionGroupPicker_1_input.TraML
value