| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_export_jtv/cnvkit_export_jtv/0.9.12+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_export_jtv/cnvkit_export_jtv/0.9.11+galaxy1 |
| cnvkit_export_jtv |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cnvkit | 0.9.12 | package |
| samtools | 1.21 | package |
| Additional information about this tool |
ln -s '$input_segmented_file' ./sample.cnr &&
cnvkit.py export jtv
./sample.cnr
--output sample.cnv.jtv
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_segmented_file: sample.cnr |
name: value |
sample.cnr value |