| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_compnovocid/CompNovoCID/2.8+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_compnovocid/CompNovoCID/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_compnovocid/CompNovoCID/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_compnovocid/CompNovoCID/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_compnovocid/CompNovoCID/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_compnovocid/CompNovoCID/2.1.0 |
| CompNovoCID |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.8 | package |
| openms-thirdparty | 2.8 | package |
| omssa | 2.1.9 | package |
| blast | 2.13.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: CompNovoCID_1_input.mzML algorithm|max_number_aa_per_decomp: 4 algorithm|tryptic_only: True algorithm|precursor_mass_tolerance: 0.3 algorithm|fragment_mass_tolerance: 0.3 algorithm|max_number_pivot: 9 algorithm|max_subscore_number: 40 algorithm|decomp_weights_precision: 0.01 algorithm|double_charged_iso_threshold: 0.6 algorithm|max_mz: 2000.0 algorithm|min_mz: 200.0 algorithm|max_isotope_to_score: 3 algorithm|max_decomp_weight: 450.0 algorithm|max_isotope: 3 algorithm|missed_cleavages: 1 algorithm|number_of_hits: 1 algorithm|estimate_precursor_mz: True algorithm|number_of_prescoring_hits: 250 algorithm|fixed_modifications: None algorithm|variable_modifications: None algorithm|residue_set: Natural19WithoutI adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
CompNovoCID_1_input.mzML value |