| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sambamba_merge/sambamba_merge/1.0.1+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/sambamba_merge/sambamba_merge/1.0.1+galaxy1 |
| sambamba_merge |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| sambamba | 1.0.1 | package |
| Additional information about this tool |
sambamba merge
-l $compression_level
'${output}'
#for $infile in $input_bam:
'${infile}'
#end for
--nthreads \${GALAXY_SLOTS:-8}
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bam: ['qname_sorted.bam', 'qname_sorted.bam'] compression_level: 5 |
name: value |
qname_sorted.bam value |
| Test-2 |
input_bam: ['coordinate_sorted.bam', 'coordinate_sorted.bam'] compression_level: 5 |
name: value |
coordinate_sorted.bam value |