| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/qiime_make_phylogeny/qiime_make_phylogeny/1.9.1.0 (this tool) |
| qiime_make_phylogeny |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime | 1.9.1 | package |
| raxml | 8.2.9 | package |
| clustalw | 2.1 | package |
| muscle | 3.8.1551 | package |
| clearcut | 1.0.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
tree_method: fasttree root_method: tree_method_default input_fp: make_phylogeny/aligned.fasta |
attributes: name attributes: name |
make_phylogeny/aligned.fasta name |
| Test-2 |
tree_method: raxml_v730 root_method: tree_method_default input_fp: make_phylogeny/aligned.fasta |
attributes: name attributes: name |
make_phylogeny/aligned.fasta name |
| Test-3 |
tree_method: muscle root_method: tree_method_default input_fp: make_phylogeny/aligned.fasta |
attributes: name attributes: name |
make_phylogeny/aligned.fasta name |
| Test-4 |
tree_method: clustalw root_method: tree_method_default input_fp: make_phylogeny/aligned.fasta |
attributes: name attributes: name |
make_phylogeny/aligned.fasta name |
| Test-5 |
tree_method: clearcut root_method: tree_method_default input_fp: make_phylogeny/aligned.fasta |
attributes: name attributes: name |
make_phylogeny/aligned.fasta name |
| Test-6 |
tree_method: fasttree root_method: midpoint input_fp: make_phylogeny/aligned.fasta |
attributes: name attributes: name |
make_phylogeny/aligned.fasta name |