Repository revision
13:56c9ad9cdb65

Repository 'openms_databasefilter'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_databasefilter

DatabaseFilter tool metadata
Miscellaneous
Filters a protein database (FASTA format) based on identified proteins
DatabaseFilter
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_databasefilter/DatabaseFilter/2.6+galaxy0
2.6+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_databasefilter/DatabaseFilter/2.8+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_databasefilter/DatabaseFilter/2.6+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_databasefilter/DatabaseFilter/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_databasefilter/DatabaseFilter/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_databasefilter/DatabaseFilter/2.2.0
DatabaseFilter
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.6 package
openms-thirdparty 2.6 package
blast 2.9.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: DatabaseFilter_1.fasta
id: DatabaseFilter_1.idXML
method: whitelist
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
DatabaseFilter_1.fasta
DatabaseFilter_1.idXML
value
Test-2 in: DatabaseFilter_1.fasta
id: DatabaseFilter_1.idXML
method: blacklist
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
DatabaseFilter_1.fasta
DatabaseFilter_1.idXML
value
Test-3 in: DatabaseFilter_3.fasta
id: DatabaseFilter_3.mzid
method: whitelist
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
DatabaseFilter_3.fasta
DatabaseFilter_3.mzid
value
Test-4 in: DatabaseFilter_3.fasta
id: DatabaseFilter_3.mzid
method: blacklist
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
DatabaseFilter_3.fasta
DatabaseFilter_3.mzid
value