| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.6+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.4.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.4.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.4.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.3.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/2.1.4.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/2.1.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/2.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/2.0.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/2.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/1.8.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/1.8.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/1.7.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/1.7.1.0 |
| hicexplorer_hiccorrectmatrix |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicexplorer | 3.6 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
matrix_h5_cooler: small_test_matrix.h5 mode|correctionMethod|filterThreshold_low: -2.0 mode|correctionMethod|filterThreshold_large: 4 mode|correctionMethod|correctionMethod_selector: ice mode|mode_selector: correct chromosomes_0|chromosome: chrUextra chromosomes_1|chromosome: chr3LHet |
name: value |
small_test_matrix.h5 value |
| Test-2 |
matrix_h5_cooler: small_test_matrix.h5 mode|correctionMethod|correctionMethod_selector: kr mode|mode_selector: correct |
name: value |
small_test_matrix.h5 value |
| Test-3 |
matrix_h5_cooler: small_test_matrix.cool mode|correctionMethod|correctionMethod_selector: kr mode|mode_selector: correct |
name: value |
small_test_matrix.cool value |
| Test-4 |
matrix_h5_cooler: small_test_matrix.h5 mode|correctionMethod|filterThreshold_low: -2.0 mode|correctionMethod|filterThreshold_large: 4 mode|correctionMethod|correctionMethod_selector: ice mode|mode_selector: correct chromosomes_0|chromosome: chrUextra chromosomes_1|chromosome: chr3LHet |
name: value |
small_test_matrix.h5 value |
| Test-5 |
matrix_h5_cooler: small_test_matrix.h5 mode|mode_selector: diagnostic_plot chromosomes_0|chromosome: chrUextra chromosomes_1|chromosome: chr3LHet |
name: value |
small_test_matrix.h5 value |