| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefinderidentification/FeatureFinderIdentification/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefinderidentification/FeatureFinderIdentification/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefinderidentification/FeatureFinderIdentification/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefinderidentification/FeatureFinderIdentification/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefinderidentification/FeatureFinderIdentification/2.1.0 |
| FeatureFinderIdentification |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: FeatureFinderIdentification_1_input.mzML id: FeatureFinderIdentification_1_input.idXML extract|batch_size: 1000 extract|mz_window: 0.1 extract|n_isotopes: 2 extract|isotope_pmin: 0.0 extract|rt_quantile: 0.95 extract|rt_window: 0.0 detect|peak_width: 60.0 detect|min_peak_width: 0.2 detect|signal_to_noise: 0.8 detect|mapping_tolerance: 0.0 svm|samples: 0 svm|no_selection: False svm|kernel: RBF svm|xval: 5 svm|log2_C: -5.0 -3.0 -1.0 1.0 3.0 5.0 7.0 9.0 11.0 13.0 15.0 svm|log2_gamma: -15.0 -13.0 -11.0 -9.0 -7.0 -5.0 -3.0 -1.0 1.0 3.0 svm|epsilon: 0.001 svm|cache_size: 100.0 svm|no_shrinking: False svm|predictors: peak_apices_sum,var_xcorr_coelution,var_xcorr_shape,var_library_sangle,var_intensity_score,sn_ratio,var_log_sn_score,var_elution_model_fit_score,xx_lda_prelim_score,var_isotope_correlation_score,var_isotope_overlap_score,var_massdev_score,main_var_xx_swath_prelim_score svm|min_prob: 0.0 model|type: none model|add_zeros: 0.2 model|unweighted_fit: False model|no_imputation: False model|check|min_area: 1.0 model|check|boundaries: 0.5 model|check|width: 10.0 model|check|asymmetry: 10.0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FeatureFinderIdentification_1_input.mzML FeatureFinderIdentification_1_input.idXML value |
| Test-2 |
in: FeatureFinderIdentification_1_input.mzML id: FeatureFinderIdentification_1_input.idXML extract|batch_size: 1000 extract|mz_window: 0.1 extract|n_isotopes: 2 extract|isotope_pmin: 0.0 extract|rt_quantile: 0.95 extract|rt_window: 0.0 detect|peak_width: 60.0 detect|min_peak_width: 0.2 detect|signal_to_noise: 0.8 detect|mapping_tolerance: 0.0 svm|samples: 0 svm|no_selection: False svm|kernel: RBF svm|xval: 5 svm|log2_C: -5.0 -3.0 -1.0 1.0 3.0 5.0 7.0 9.0 11.0 13.0 15.0 svm|log2_gamma: -15.0 -13.0 -11.0 -9.0 -7.0 -5.0 -3.0 -1.0 1.0 3.0 svm|epsilon: 0.001 svm|cache_size: 100.0 svm|no_shrinking: False svm|predictors: peak_apices_sum,var_xcorr_coelution,var_xcorr_shape,var_library_sangle,var_intensity_score,sn_ratio,var_log_sn_score,var_elution_model_fit_score,xx_lda_prelim_score,var_isotope_correlation_score,var_isotope_overlap_score,var_massdev_score,main_var_xx_swath_prelim_score svm|min_prob: 0.0 model|type: symmetric model|add_zeros: 0.2 model|unweighted_fit: False model|no_imputation: False model|check|min_area: 1.0 model|check|boundaries: 0.5 model|check|width: 10.0 model|check|asymmetry: 10.0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FeatureFinderIdentification_1_input.mzML FeatureFinderIdentification_1_input.idXML value |
| Test-3 |
in: FeatureFinderIdentification_1_input.mzML id: FeatureFinderIdentification_1_input.idXML extract|batch_size: 10 extract|mz_window: 0.1 extract|n_isotopes: 2 extract|isotope_pmin: 0.0 extract|rt_quantile: 0.95 extract|rt_window: 0.0 detect|peak_width: 60.0 detect|min_peak_width: 0.2 detect|signal_to_noise: 0.8 detect|mapping_tolerance: 0.0 svm|samples: 0 svm|no_selection: False svm|kernel: RBF svm|xval: 5 svm|log2_C: -5.0 -3.0 -1.0 1.0 3.0 5.0 7.0 9.0 11.0 13.0 15.0 svm|log2_gamma: -15.0 -13.0 -11.0 -9.0 -7.0 -5.0 -3.0 -1.0 1.0 3.0 svm|epsilon: 0.001 svm|cache_size: 100.0 svm|no_shrinking: False svm|predictors: peak_apices_sum,var_xcorr_coelution,var_xcorr_shape,var_library_sangle,var_intensity_score,sn_ratio,var_log_sn_score,var_elution_model_fit_score,xx_lda_prelim_score,var_isotope_correlation_score,var_isotope_overlap_score,var_massdev_score,main_var_xx_swath_prelim_score svm|min_prob: 0.0 model|type: none model|add_zeros: 0.2 model|unweighted_fit: False model|no_imputation: False model|check|min_area: 1.0 model|check|boundaries: 0.5 model|check|width: 10.0 model|check|asymmetry: 10.0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FeatureFinderIdentification_1_input.mzML FeatureFinderIdentification_1_input.idXML value |