Repository revision
0:fafb3d685fa9

Repository 'ivar_getmasked'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ivar_getmasked

ivar getmasked tool metadata
Miscellaneous
Detect primer mismatches and get primer indices for the amplicon to be masked
ivar_getmasked
toolshed.g2.bx.psu.edu/repos/iuc/ivar_getmasked/ivar_getmasked/1.0.1+galaxy0
1.0.1+galaxy0
ivar version | grep version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/ivar_getmasked/ivar_getmasked/1.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/ivar_getmasked/ivar_getmasked/1.0.1+galaxy0 (this tool)
ivar_getmasked
Requirements (dependencies defined in the <requirements> tag set)
name version type
ivar 1.0.1 package
samtools 1.9 package
Functional tests
name inputs outputs required files
Test-1 primers_tsv: zika/db/pair_information.tsv
primers_bed: zika/db/zika_primers_consensus.bed
filtered_tsv: zika/primers_Z52_consensus.tsv
attributes: name
zika/primers_Z52_consensus.tsv
zika/db/zika_primers_consensus.bed
zika/db/pair_information.tsv
name