Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_dists/mothur_get_dists/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_dists/mothur_get_dists/1.36.1.0 |
mothur_get_dists |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$accnos' accnos.dat && ln -s '$input.dist' input.dist.dat && echo 'get.dists( accnos=accnos.dat, #if $input.source == "phylip": phylip=input.dist.dat #else column=input.dist.dat #end if )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input|dist: 98_sq_phylip_amazon.dist input|source: phylip accnos: amazon.bad.accnos savelog: True |
name: value name: value |
98_sq_phylip_amazon.dist amazon.bad.accnos value |