| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.53+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.4+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.4+galaxy0 |
| stacks2_denovomap |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 2.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type|fqinputs: list:paired collection popmap: denovo_map/popmap_cstacks.tsv input_type|input_type_select: paired |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.1.fq demultiplexed/PopA_02.2.fq denovo_map/popmap_cstacks.tsv name |
| Test-2 |
input_type|fqinputs: ['demultiplexed/PopA_01.1.fq', 'demultiplexed/PopA_02.1.fq'] popmap: denovo_map/popmap_cstacks.tsv input_type|input_type_select: single |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq denovo_map/popmap_cstacks.tsv name |
| Test-3 |
assembly_options|M: 3 input_type|fqinputs: list collection assembly_options|n: 3 input_type|input_type_select: paired model_options|gt_alpha: 0.1 popmap: denovo_map/popmap_cstacks.tsv popfilter_options|min_populations: 0 popfilter_options|min_samples_per_pop: 1 pe_options|rm_pcr_duplicates: True model_options|var_alpha: 0.1 |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq denovo_map/popmap_cstacks.tsv name |