| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/0.9.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/0.8.0 |
| shovill |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| shovill | 1.1.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
library|lib_type: paired library|R2: mutant_R2.fastq library|R1: mutant_R1.fastq |
attributes: name attributes: name |
mutant_R1.fastq mutant_R2.fastq name |
| Test-2 |
trim: True adv|minlen: 0 library|lib_type: paired library|R2: mutant_R2.fastq library|R1: mutant_R1.fastq adv|depth: 0 adv|namefmt: contig%03d adv|nocorr: False adv|mincov: 0 |
attributes: name attributes: name |
mutant_R1.fastq mutant_R2.fastq name |
| Test-3 |
assembler: megahit library|R1: mutant_R1.fastq library|R2: mutant_R2.fastq library|lib_type: paired |
attributes: name attributes: name |
mutant_R1.fastq mutant_R2.fastq name |
| Test-4 |
assembler: skesa library|R1: mutant_R1.fastq library|R2: mutant_R2.fastq library|lib_type: paired |
attributes: name attributes: name |
mutant_R1.fastq mutant_R2.fastq name |
| Test-5 |
assembler: velvet library|R1: mutant_R1.fastq library|R2: mutant_R2.fastq library|lib_type: paired |
attributes: name attributes: name |
mutant_R1.fastq mutant_R2.fastq name |
| Test-6 |
trim: True library|lib_type: paired library|R2: mutant_R2.fastq.gz library|R1: mutant_R1.fastq.gz |
attributes: name attributes: name |
mutant_R1.fastq.gz mutant_R2.fastq.gz name |