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Repository revision

Revision: 9:385a965c6f87

Repository 'khmer_abundance_distribution_single'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single

khmer: Abundance Distribution (all-in-one) tool metadata

Miscellaneous

Name: khmer: Abundance Distribution (all-in-one)

Description: Calculate abundance distribution of k-mers

Id: khmer_abundance_distribution_single

Guid: toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/3.0.0a3+galaxy2

Version: 3.0.0a3+galaxy2

Version command string: abundance-dist-single.py --version 2>&1 | tail -n 1 | cut -d ' ' -f 2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/3.0.0a3+galaxy3

toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/3.0.0a3+galaxy2 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/3.0.0a3+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/3.0.0a1.0

toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/2.0.0

khmer_abundance_distribution_single

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

khmer

3.0.0a3

package

Functional tests

name

inputs

outputs

required files

Test-1

input_sequence_filename: test-abund-read-2.fa
parameters|ksize: 17
parameters|n_tables: 2
parameters|tablesize_specific: 1e7
parameters|type: specific

name: value

test-abund-read-2.fa
value

Test-2

input_sequence_filename: test-abund-read-2.fq.gz
bigcount: False
parameters|ksize: 17
parameters|n_tables: 2
parameters|tablesize_specific: 1e7
parameters|type: specific

name: value

test-abund-read-2.fq.gz
value