| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/3.0.0a3+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/3.0.0a3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/3.0.0a1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution_single/khmer_abundance_distribution_single/2.0.0 |
| khmer_abundance_distribution_single |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| khmer | 3.0.0a3 | package |
| Additional information about this tool |
set -u &&
abundance-dist-single.py
#if $parameters.type == "simple"
--ksize=20
--n_tables=4
--max-tablesize=$parameters.tablesize
#else
--ksize=$parameters.ksize
--n_tables=$parameters.n_tables
--max-tablesize="$parameters.tablesize_specific"
#end if
${zero}
${bigcount}
#if $save_countgraph
--savegraph=${optional_output_countgraph}
#end if
--squash
--threads \${GALAXY_SLOTS:-4}
${input_sequence_filename}
${output_histogram_filename}
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_sequence_filename: test-abund-read-2.fa parameters|ksize: 17 parameters|n_tables: 2 parameters|tablesize_specific: 1e7 parameters|type: specific |
name: value |
test-abund-read-2.fa value |
| Test-2 |
input_sequence_filename: test-abund-read-2.fq.gz bigcount: False parameters|ksize: 17 parameters|n_tables: 2 parameters|tablesize_specific: 1e7 parameters|type: specific |
name: value |
test-abund-read-2.fq.gz value |