| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/1.0.0_rc3+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/1.0.0_rc1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/1.0.0_rc1.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/0.0.3 |
| vcfcheck |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| vcflib | 1.0.0_rc3 | package |
| Additional information about this tool |
#set $reference_fasta_filename = "localref.fa"
#if str( $reference_source.reference_source_selector ) == "history":
ln -s '${reference_source.ref_file}' '${reference_fasta_filename}' &&
#else:
#set $reference_fasta_filename = str( $reference_source.ref_file.fields.path )
#end if
vcfcheck $failure_selector -f '${reference_fasta_filename}' '${input_vcf}' > '${out_file1}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_source|ref_file: vcflib-test-genome-phix.fa reference_source|input_vcf: vcflib-phix.vcf reference_source|reference_source_selector: history failure_selector: -x |
name: value |
vcflib-test-genome-phix.fa vcflib-phix.vcf value |