| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/immport-devteam/flowai/flowAI/1.0+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/immport-devteam/flowai/flowAI/1.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/immport-devteam/flowai/flowAI/1.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/immport-devteam/flowai/flowAI/1.0 |
| flowAI |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-flowcore | 1.42.0 | package |
| bioconductor-flowai | 1.2.9 | package |
| mscorefonts | 0.0.1 | package |
| Additional information about this tool |
Rscript $__tool_directory__/FCSflowAI.R '${input}' '${remove}' $alphaFR $chremFS $outFS $penFS '${sideFM}' report.html high.fcs low.fcs qc.fcs &&
cp report.html $full_rep
#if $highQ_FCS:
&& cp high.fcs $highfcs
#end if
#if $lowQ_FCS:
&& cp low.fcs $lowfcs
#end if
#if $QC_FCS:
&& cp qc.fcs $qcfcs
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: input.fcs remove: all alphaFR: 0.01 chremFS: True outFS: False penFS: 200 sideFM: both highQ_FCS: True lowQ_FCS: False QC_FCS: False |
name: value name: value |
input.fcs value |
| Test-2 |
input: input.fcs remove: all alphaFR: 0.01 chremFS: True outFS: False penFS: 200 sideFM: both highQ_FCS: True lowQ_FCS: True QC_FCS: True |
name: value name: value name: value name: value |
input.fcs value |
| Test-3 |
input: input.fcs remove: all alphaFR: 0.01 chremFS: True outFS: True penFS: 200 sideFM: both highQ_FCS: True lowQ_FCS: False QC_FCS: False |
name: value name: value |
input.fcs value |
| Test-4 |
input: input.fcs remove: all alphaFR: 0.01 chremFS: False outFS: False penFS: 200 sideFM: both highQ_FCS: True lowQ_FCS: False QC_FCS: False |
name: value name: value |
input.fcs value |