Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/trinity/run_DE_analysis/2.1.1.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/trinity/run_DE_analysis/2.1.1 |
run_DE_analysis |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
trinity | 2.1.1 | package |
deseq2 | 1.10.0 | package |
bioconductor-deseq2 | 1.10.0 | package |
edger | 3.12.0 | package |
bioconductor-edger | 3.12.0 | package |
limma | 3.28.2 | package |
bioconductor-limma | 3.27.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
method_choice|method: DESeq2 matrix: count/qcheck/matrix.counts.matrix samples: count/samples.txt |
count/qcheck/matrix.counts.matrix count/samples.txt |