Repository revision
6:f7564c3f9dc0

Repository 'trinity'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinity

Differential expression analysis tool metadata
Miscellaneous
using a Trinity assembly
run_DE_analysis
toolshed.g2.bx.psu.edu/repos/iuc/trinity/run_DE_analysis/2.1.1.1
2.1.1.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/trinity/run_DE_analysis/2.1.1.1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/trinity/run_DE_analysis/2.1.1
run_DE_analysis
Requirements (dependencies defined in the <requirements> tag set)
name version type
trinity 2.1.1 package
deseq2 1.10.0 package
bioconductor-deseq2 1.10.0 package
edger 3.12.0 package
bioconductor-edger 3.12.0 package
limma 3.28.2 package
bioconductor-limma 3.27.4 package
Functional tests
name inputs outputs required files
Test-1 method_choice|method: DESeq2
matrix: count/qcheck/matrix.counts.matrix
samples: count/samples.txt
count/qcheck/matrix.counts.matrix
count/samples.txt