| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.2.0.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.1.1.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.1.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.0.6.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.0.6 |
| trinity |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| trinity | 2.1.1 | package |
| bowtie | 1.1.2 | package |
| samtools | 1.2 | package |
| TRINITY_MEM_OPTIONS | not provided | set_environment |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputs|left_input: reads.left.fq inputs|paired_or_single: paired inputs|strand|is_strand_specific: True inputs|right_input: reads.right.fq norm: False inputs|strand|library_type: RF |
assembled_transcripts: Trinity.fasta |
reads.left.fq reads.right.fq raw/Trinity.fasta |
| Test-2 |
inputs|left_input: reads.left.fq inputs|paired_or_single: paired inputs|strand|is_strand_specific: True inputs|right_input: reads.right.fq norm: True inputs|strand|library_type: RF |
assembled_transcripts: Trinity.fasta |
reads.left.fq reads.right.fq norm/Trinity.fasta |