Repository revision
7:03469c9daff1

Repository 'qiime_filter_fasta'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_fasta

Filter fasta tool metadata
Miscellaneous
Filter fasta
to remove sequences based on input criteria (filter_fasta)
qiime_filter_fasta
toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_fasta/qiime_filter_fasta/1.9.1.0
1.9.1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_fasta/qiime_filter_fasta/1.9.1.0 (this tool)
qiime_filter_fasta
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 negate: False
input_fasta_fp: filter_fasta/inseqs.fasta
selection|otu_map: filter_fasta/otu_map.txt
selection|type: otu_map
attributes: name
filter_fasta/inseqs.fasta
filter_fasta/otu_map.txt
name
Test-2 negate: True
input_fasta_fp: filter_fasta/inseqs.fasta
selection|otu_map: filter_fasta/otu_map.txt
selection|type: otu_map
attributes: name
filter_fasta/inseqs.fasta
filter_fasta/otu_map.txt
name
Test-3 negate: False
input_fasta_fp: filter_fasta/inseqs.fasta
selection|type: seq_list
selection|seq_id_fp: filter_fasta/seqs_to_keep.txt
attributes: name
filter_fasta/inseqs.fasta
filter_fasta/seqs_to_keep.txt
name
Test-4 negate: False
input_fasta_fp: filter_fasta/inseqs.fasta
selection|biom_fp: filter_fasta/otu_table.biom
selection|type: biom
attributes: name
filter_fasta/inseqs.fasta
filter_fasta/otu_table.biom
name
Test-5 negate: False
input_fasta_fp: filter_fasta/inseqs.fasta
selection|subject_fasta_fp: filter_fasta/sl_inseqs.fasta
selection|type: fasta
attributes: name
filter_fasta/inseqs.fasta
filter_fasta/sl_inseqs.fasta
name
Test-6 negate: False
input_fasta_fp: filter_fasta/inseqs.fasta
selection|type: prefix
selection|seq_id_prefix: S5
attributes: name
filter_fasta/inseqs.fasta
name
Test-7 negate: False
input_fasta_fp: filter_fasta/inseqs.fasta
selection|sample_id_fp: filter_fasta/map.txt
selection|type: prefix_list
attributes: name
filter_fasta/inseqs.fasta
filter_fasta/map.txt
name