| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.5+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.0+galaxy0 |
| gfastats |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gfastats | 1.3.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: dataset_01.fastq.gz mode_condition|swiss_army_knife: swiss_army.sak mode_condition|output_condition|out_format: fasta.gz mode_condition|selector: manipulation |
name: value |
dataset_01.fastq.gz swiss_army.sak value |
| Test-2 |
input_file: dataset_01.fastq.gz mode_condition|swiss_army_knife: swiss_army.sak mode_condition|output_condition|out_format: fasta.gz mode_condition|remove_terminal_gaps: True mode_condition|selector: manipulation |
name: value |
dataset_01.fastq.gz swiss_army.sak value |
| Test-3 |
input_file: dataset_01.fastq.gz mode_condition|statistics_condition|out_size: c mode_condition|statistics_condition|selector: size mode_condition|locale: False mode_condition|selector: statistics |
name: value |
dataset_01.fastq.gz value |
| Test-4 |
input_file: dataset_02.fasta.gz mode_condition|statistics_condition|selector: sequence mode_condition|locale: False mode_condition|selector: statistics |
name: value |
dataset_02.fasta.gz value |
| Test-5 |
input_file: dataset_03.fasta mode_condition|statistics_condition|expected_genomesize: 600000 mode_condition|statistics_condition|selector: assembly mode_condition|locale: False mode_condition|selector: statistics |
name: value |
dataset_03.fasta value |
| Test-6 |
input_file: dataset_04.gfa mode_condition|statistics_condition|out_coord: a mode_condition|statistics_condition|selector: coordinates mode_condition|locale: False mode_condition|selector: statistics |
name: value |
dataset_04.gfa value |
| Test-7 |
input_file: dataset_04.gfa mode_condition|output_condition|out_format: fasta.gz mode_condition|selector: manipulation |
name: value |
dataset_04.gfa value |
| Test-8 |
input_file: dataset_03.fasta mode_condition|statistics_condition|selector: assembly mode_condition|locale: False mode_condition|tabular: False mode_condition|selector: statistics |
name: value |
dataset_03.fasta value |
| Test-9 |
input_file: dataset_01.fastq.gz mode_condition|output_condition|out_format: fasta.gz mode_condition|sort: ascending mode_condition|selector: manipulation |
name: value |
dataset_01.fastq.gz value |
| Test-10 |
input_file: dataset_03.fasta mode_condition|output_condition|out_format: fasta.gz mode_condition|homopolymer_compress: 10 mode_condition|selector: manipulation |
name: value |
dataset_03.fasta value |
| Test-11 |
input_file: dataset_04.gfa mode_condition|agp_to_path: dataset_05.agp mode_condition|discover_paths: True mode_condition|selector: scaffolding |
name: value |
dataset_04.gfa dataset_05.agp value |
| Test-12 |
input_file: dataset_03.fasta target_condition|include_bed: regions.bed target_condition|target_option: true mode_condition|locale: False |
name: value |
dataset_03.fasta regions.bed value |
| Test-13 |
input_file: dataset_04.gfa mode_condition|statistics_condition|selector: assembly mode_condition|locale: False mode_condition|tabular: False mode_condition|discover_paths: True mode_condition|selector: statistics |
name: value |
dataset_04.gfa value |
| Test-14 |
input_file: dataset_04.gfa mode_condition|agp_to_path: dataset_05.agp mode_condition|discover_paths: True mode_condition|no_sequence: True mode_condition|selector: scaffolding |
name: value |
dataset_04.gfa dataset_05.agp value |
| Test-15 |
input_file: dataset_01_a.fasta.gz mode_condition|output_condition|no_sequence: True mode_condition|output_condition|out_format: gfa mode_condition|sort: ascending mode_condition|selector: manipulation |
name: value |
dataset_01_a.fasta.gz value |