| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/nextalign/nextalign/1.4.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextalign/nextalign/1.3.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/nextalign/nextalign/1.3.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextalign/nextalign/0.1.6+galaxy0 |
| nextalign |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| nextalign | 1.3.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_source|ref_file: reference.fasta reference_source|reference_source_selector: history sequences: subsampled.fasta output_insertions: True translation|genes: E,M,N,ORF10,ORF14,ORF1a,ORF1b,ORF3a,ORF6,ORF7a,ORF7b,ORF8,ORF9b,S translation|genemap: genemap.gtf translation|translation_select: yes |
name: value name: value |
reference.fasta subsampled.fasta genemap.gtf value |
| Test-2 |
reference_source|ref_file: reference.fasta reference_source|reference_source_selector: history sequences: subsampled.fasta output_insertions: False translation|translation_select: no |
name: value |
reference.fasta subsampled.fasta value |
| Test-3 |
reference_source|ref_file: reference_fasta reference_source|reference_source_selector: cached sequences: subsampled.fasta output_insertions: False translation|translation_select: no |
name: value |
subsampled.fasta value |