| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/data_manager_malt_index_builder/data_manager_malt_index_builder/0.5.3+galaxy0 (this tool) |
| data_manager_malt_index_builder |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 3.8 | package |
| malt | 0.53 | package |
| Additional information about this tool |
python '$__tool_directory__/malt_index_builder.py'
'${out_file}'
--fasta_filename '${all_fasta_source.fields.path}'
--fasta_dbkey '${all_fasta_source.fields.dbkey}'
--fasta_description '${all_fasta_source.fields.name}'
--sequence_type '${sequence_type}'
#if str($protein_reduct_setting_cond.protein_reduct_setting) == 'yes':
--protein_reduct '${protein_reduct_setting_cond.protein_reduct}'
#end if
#if str($seed_setting_cond.seed_setting) == 'yes':
--shapes '${seed_setting_cond.shapes}'
## malt-build requires a string here.
--max_hits_per_seed '${seed_setting_cond.max_hits_per_seed}'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
all_fasta_source: phiX174 sequence_name: Pretty name for phiX174 sequence_id: phiX174-1 |
name: value |
value |
| Test-2 |
all_fasta_source: phiX174 sequence_name: Pretty name for phiX174 sequence_id: phiX174-1 seed_setting_cond|shapes: 111110111011110110111111 seed_setting_cond|seed_setting: yes |
name: value |
value |
| Test-3 |
all_fasta_source: phiX174 sequence_name: Pretty name for phiX174 sequence_id: phiX174-2 sequence_type: Protein protein_reduct_setting_cond|protein_reduct: BLOSUM50_10 protein_reduct_setting_cond|protein_reduct_setting: yes |
name: value |
value |