| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/orfipy/orfipy/0.0.4+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/orfipy/orfipy/0.0.4+galaxy0 |
| orfipy |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| orfipy | 0.0.4 | package |
| Additional information about this tool |
orfipy
--procs "\${GALAXY_SLOTS:-1}"
--outdir ./
#for $o in str($out_files).split(','):
#if $o == 'BED':
--bed '$out_bed'
#else if $o == 'BED12':
--bed12 '$out_bed12'
#else if $o == 'DNA':
--dna '$out_dna'
#else if $o == 'RNA':
--rna '$out_rna'
#else if $o == 'PEP':
--pep '$out_pep'
#end if
#end for
--strand $strand
#if $min:
--min $min
#end if
#if $max:
--max $max
#end if
--table $table
#if $start:
--start '$start'
#end if
#if $stop:
--stop '$stop'
#end if
$ignore_case
$partial_3
$partial_5
$between_stops
$include_stop
'$input1'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input1: orfipy.fa out_files: BED |
name: value |
orfipy.fa value |
| Test-2 |
input1: orfipy.fa out_files: DNA min: 100 partial_5: True |
name: value |
orfipy.fa value |
| Test-3 |
input1: orfipy.fa.gz out_files: DNA min: 100 partial_5: True |
name: value |
orfipy.fa.gz value |
| Test-4 |
input1: orfipy.fa.gz out_files: DNA max: 100000000 |
name: value |
orfipy.fa.gz value |