| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/mqppep_anova/mqppep_anova/0.1.19+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/mqppep_anova/mqppep_anova/0.1.18+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/mqppep_anova/mqppep_anova/0.1.17+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/mqppep_anova/mqppep_anova/0.1.16+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/mqppep_anova/mqppep_anova/0.1.15+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/mqppep_anova/mqppep_anova/0.1.13+galaxy0 |
| mqppep_anova |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-preprocesscore | 1.56.0 | package |
| gmp | 6.2.1 | package |
| numpy | 1.23.4 | package |
| openblas | 0.3.3 | package |
| pandas | 1.5.1 | package |
| perl-dbd-sqlite | 1.70 | package |
| perl | 5.32.1 | package |
| pyahocorasick | 1.4.4 | package |
| python | 3.10.6 | package |
| r-base | 4.1.3 | package |
| r-caret | 6.0_93 | package |
| r-data.table | 1.14.4 | package |
| r-dbi | 1.1.3 | package |
| r-ggplot2 | 3.3.6 | package |
| r-gplots | 3.1.3 | package |
| r-latex2exp | 0.9.5 | package |
| r-optparse | 1.7.3 | package |
| r-reshape2 | 1.4.4 | package |
| r-rmarkdown | 2.17 | package |
| r-sessioninfo | 1.2.2 | package |
| r-sqldf | 0.4_11 | package |
| r-stringr | 1.4.1 | package |
| r-tinytex | 0.42 | package |
| r-vioplot | 0.3.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: test_input_for_anova.tabular alpha_file: alpha_levels.tabular preproc_sqlite: test_input_for_anova.sqlite intensity_column_regex: ^Intensity[^_] imputation|imputation_method: median sample_names_regex: \.\d+[A-Z]$ sample_grouping_regex: \d+ |
name: value name: value |
test_input_for_anova.tabular alpha_levels.tabular test_input_for_anova.sqlite value |
| Test-2 |
input_file: test_input_for_anova.tabular alpha_file: alpha_levels.tabular preproc_sqlite: test_input_for_anova.sqlite intensity_column_regex: ^Intensity[^_] imputation|imputation_method: mean sample_names_regex: \.\d+[A-Z]$ sample_grouping_regex: \d+ intnsty_min_vals_per_smpl_grp: 1 group_filter|group_filter_method: none ksea_min_substrate_count: 1 ksea_cutoff_threshold: 0.5 |
name: value name: value |
test_input_for_anova.tabular alpha_levels.tabular test_input_for_anova.sqlite value |
| Test-3 |
input_file: test_input_for_anova.tabular alpha_file: alpha_levels.tabular preproc_sqlite: test_input_for_anova.sqlite intensity_column_regex: ^Intensity[^_] imputation|imputation_method: group-median sample_names_regex: \.\d+[A-Z]$ sample_grouping_regex: \d+ intnsty_min_vals_per_smpl_grp: 1 group_filter|group_filter_method: none ksea_min_substrate_count: 1 ksea_cutoff_threshold: 0.5 |
name: value name: value |
test_input_for_anova.tabular alpha_levels.tabular test_input_for_anova.sqlite value |
| Test-4 |
input_file: test_input_for_anova.tabular alpha_file: alpha_levels.tabular preproc_sqlite: test_input_for_anova.sqlite intensity_column_regex: ^Intensity[^_] imputation|meanPercentile: 1 imputation|sdPercentile: 1.0 imputation|imputation_method: random sample_names_regex: \.\d+[A-Z]$ sample_grouping_regex: \d+ |
name: value name: value |
test_input_for_anova.tabular alpha_levels.tabular test_input_for_anova.sqlite value |