Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.55+galaxy3 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.55+galaxy2 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.55+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.55+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.53+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.4+galaxy0 |
stacks2_kmerfilter |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 2.55 | package |
python | 3.7 | package |
findutils | 4.6.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_type|fqinputs: clonefilter/R1_0001.1.fq.gz input_type|input_type_select: single options_filtering|rare: True options_filtering|abundant: True options_filtering|k_len: 16 add_log: True |
name: value name: value name: value |
clonefilter/R1_0001.1.fq.gz value |
Test-2 |
input_type|fqinputs: paired collection input_type|input_type_select: paired capture: True options_normalization|normalize: 1 add_log: True |
name: value |
clonefilter/R1_0001.1.fq.gz clonefilter/R2_0001.2.fq.gz value |
Test-3 |
input_type|fqinputs: clonefilter/R1_0001.1.fq.gz input_type|input_type_select: single options_kmer_char|write_k_freq: True add_log: True |
name: value name: value |
clonefilter/R1_0001.1.fq.gz value |
Test-4 |
input_type|fqinputs: clonefilter/R1_0001.1.fq.gz input_type|input_type_select: single options_kmer_char|k_dist: True add_log: False |
name: value |
clonefilter/R1_0001.1.fq.gz value |