Repository revision
0:b2e3553e1be2

Repository 'stacks2_kmerfilter'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter

Stacks2: kmer filter tool metadata
Miscellaneous
Identify PCR clones
stacks2_kmerfilter
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.4+galaxy0
2.4+galaxy0
process_radtags -h |& grep process_radtags | head -n 1 | cut -d" " -f 2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_kmerfilter/stacks2_kmerfilter/2.4+galaxy0 (this tool)
stacks2_kmerfilter
Requirements (dependencies defined in the <requirements> tag set)
name version type
stacks 2.4 package
Functional tests
name inputs outputs required files
Test-1 input_type|fqinputs: clonefilter/R1_0001.1.fq.gz
input_type|input_type_select: single
options_filtering|abundant: True
options_filtering|rare: True
options_filtering|k_len: 16
add_log: True
attributes: name
attributes: name
clonefilter/R1_0001.1.fq.gz
name
Test-2 capture: True
input_type|fqinputs: paired collection
input_type|input_type_select: paired
options_normalization|normalize: 1
clonefilter/R1_0001.1.fq.gz
clonefilter/R2_0001.2.fq.gz
Test-3 input_type|fqinputs: clonefilter/R1_0001.1.fq.gz
input_type|input_type_select: single
options_kmer_char|write_k_freq: True
attributes: name
clonefilter/R1_0001.1.fq.gz
name
Test-4 input_type|fqinputs: clonefilter/R1_0001.1.fq.gz
input_type|input_type_select: single
options_kmer_char|k_dist: True
attributes: name
clonefilter/R1_0001.1.fq.gz
name