if [ -z "\$ARROW_GLOBAL_CONFIG_PATH" ]; then
        echo "__default: local" > '.auth.yml' &&
        echo "local:" >> '.auth.yml' &&
        echo "    url: \"\$GALAXY_WEBAPOLLO_URL\"" >> '.auth.yml' &&
        echo "    username: \"\$GALAXY_WEBAPOLLO_USER\"" >> '.auth.yml' &&
        echo "    password: \"\$GALAXY_WEBAPOLLO_PASSWORD\"" >> '.auth.yml' &&

        export ARROW_GLOBAL_CONFIG_PATH='.auth.yml'
      ; fi &&
  

#if str($ask_one) == "yes":
	## Nope, still don't trust them to not be dumb (or malicious), so we backup first.
	python '$__tool_directory__/export.py'
	

#if $org_source.source_select == "auto_json":
    --org_json '${org_source.org_file}'
#elif $org_source.source_select == "select":
    --org_id '${org_source.org_select}'
#else:
    --org_raw '${org_source.org_raw}'
#end if

  
	--gff '$gff_out'
  --fasta_pep '$fasta_pep'
  --fasta_cds '$fasta_cds'
  --fasta_cdna '$fasta_cdna'
  --vcf '$vcf_out'
	--json '$json_out'
  '$__user_email__'

    &&

	## Now we delete
	python '$__tool_directory__/delete_features.py'
	

#if $org_source.source_select == "auto_json":
    --org_json '${org_source.org_file}'
#elif $org_source.source_select == "select":
    --org_id '${org_source.org_select}'
#else:
    --org_raw '${org_source.org_raw}'
#end if

  
	'$__user_email__'
	#if str($filter) != "all"
		--type $filter
	#end if
	> '$output';
#else
    echo "Nothing to do" > '$output';
#end if