view clustalomega/test-data/clustalo_profileprofile.fasta @ 2:bb1847435ec1 default tip

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author clustalomega
date Fri, 22 Jul 2011 09:09:02 -0400
parents ff1768533a07
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>Q1R749_ECOUT (Q1R749)
MIFDASLKKLRKLFVNPIGFFRDSWFFNSKNKAEELLSPLKIKSKNIFIISNLGQLKKAE
SFVQKFSKRSNYLIVLATEKNTEMPKIIVEQINNKLFSSYKVLFIPTFPNVFSLKKVIWF
YNVYNYLVLNSKAKDAYFMSYAQHYAIFVYLFKKNNIRCSLIEEGTGTYKTEKENPVVNI
N-FY----SE----IINSIILF-HYPDLKFENVYGTYPILLKKKFNAQKFVEFKG-APSV
KSSTRIDNVIHKYSITRDDIIYANQKYLIEHTLFADSLISILLRIDKPDNARIFIKPHPK
EPKKNINAIQKAIK---KAKCRDIILITEPDFLIEPVIKKAKIKHLIGLTSSSLVYAPLV
SKRCQSYSIAPLMIKLCDNDKSQKGINTLRLHFDILKNFDNVKILSDDIT---SPSL---
HDKRI---FLGE------------------------------------------------
------------------------------------------------------------
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----------------------------------------
>B1LEB7_ECOSM (B1LEB7)
MIFDASLKKLRKLFVNPIGFFRDSWFFNSKNKTEKLLSPLKIKNKNIFIVVHLGQLKKAE
LFIQKFSKRSNFLIVLATKKNTEMPRLVLEQMNKKLFSSYKLLFIPTEPNTFSLKKVIWF
YNVYKYIVLNSKAKDAYFMSYAQHYAIFIWLFKKNNIRCSLIEEGTATYKTEKKNTLVNI
N-FY----SW----IINSIILF-HYPDLKFENVYGTFPNLLKEKFDAKKFFEFKT-IPLV
KSSTRMDNLIHKYRITRDDIIYVSQRYWIDNELYAHSLISTLMRIDKSDNARVFIKPHPK
ETKKHINAIQGAIN---KAKRRDIIIIVEKDFLIESIIKKCKIKHLIGLTSSSLVYASLV
YKECKTYSIAPIIIKLCNNEKSQKGTNTLRLHFDILKNFDNVKILSDDIS---SPSL---
HDKRI---FLGE------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>Q7WRI1_NEIME (Q7WRI1)
------------------------------------------------------------
SLTKMQKLKNNLLVILYTTQNMKMPKLIQKSVDKELFSVTYMFELPRKPGIVSPKKFLYI
QRGYKKLLKTIQPAHLYVMSFAGHYSSLLSLAKKMNITTHLVEEGTATYAPLLESFTYKP
TKFE----QR----FVGNNLHQ-KGYFDKFDILHVAFPEYAKKNFNANEYHRFFAHSGGI
STSQSIAKIQDKYRISQNDYIFVSQRYPVSDEVYYKTIVETLNQMSLRIEGKIFIKLHPK
EMENKNIMSLFLNM---VTINPRLVVINEPPFLIDPLIYLTTPKGIIGLTSTSIVYTPLL
SPTTQCLSIGQIV-----------------------------------------------
------------------------------------------------------------
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------------------------------------------------------------
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----------------------------------------
>Q7WRI0_NEIME (Q7WRI0)
------------------------------------------------------------
SLTKMQKLKNNLLVILYTTQNMKMPKLIQKSVDKELFSVTYMFELPRKPGIVSPKKFLYI
QRGYKKLLKTIQPAHLYVMSFAGHYSSLLSLAKKMNITTHLVEEGTATYAPLLESFTYKP
TKFE----QR----FVGNNLHQ-KGYFDKFDILHVAFPEYAKKIFNANEYHRFFAHSGGI
STSQSIAKIQDKYRISQNDYIFVSQRYPVSDEVYYKTIVETLNQMSLRIEGKIFIKLHPK
EMENKNIMSLFLNM---VTINPRLVVINEPPFLIDPLIYLTTPKGIIGLTSTSIVYTPLL
SPTTQCLSIGQIV-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
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----------------------------------------
>Q6VNL6_NEIME (Q6VNL6)
-----MLKKIKKALFQPKKFFQDSM-----------------------------------
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----------------------------------------
>A9LZW7_NEIM0 (A9LZW7)
------------------------------------------------------------
----MQKLKNNLLVILYTTQNMKMPKLIQKSVDKELFSVTYMFELPRKPGIVSPKKFLYI
QRGYKKLLKTIQPAHLYVMSFAGHYSSLLSLAKKMNITTHLVEEGTATYAPLLESFTYKP
TKFE----QR----FVGNNLHQ-KGYFDKFDILHVAFPEYAKKIFNANEYHRFFAHSGGI
STSQSIAKIQDKYRISQNDYIFVSQRYPVSDEVYYKTIVETLNQMSLRIEGKIFIKLHPK
EMENKNIMSLFLNM---VTINPRLVVINEPPFLIDPLIYLTTPKGIIGLTSTSIVYTPLL
SPTTQCLSIGQIVIDSIHHTAQQENTALIEEHLEIVKQFDFIKILSSIEDGIDTNSF---
KTEETLEMLLKSAEYAYKNKNFYQAIFYWQLASNNDLSVL----GYKSLWYYNALNKVKQ
NYKMKYLEINYIERISLYFNDKDKMIWQNIKNDFFKYSLCNQ------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>O06435_NEIME (O06435)
-----MLQKIRKALFHPKKFFQDSQWFATPL-----FSS-FAPKSNLFIISTFAQLNQAH
SLTKMQKLKNNLLVILYTTQNMKMPKLIQKSVDKELFSVTYMFELPRKPGIVSPKKFLYI
QRGYKKLLKTIQPAHLYVMSFAGHYSSLLSLAKKMNITTHLVEEGTATYAPLLESFTYKP
TKFE----QR----FVGNNLHQ-KGYFDKFDILHVAFPEYAKKIFNANEYHRFFAHSGGI
STSQSIAKIQDKYRISQNDYIFVSQRYPVSDEVYYKTIVETLNQMSLRIEGKIFIKLHPK
EMENKNIMSLFLNM---VTINPRLVVINEPPFLIDPLIYLTTPKGIIGLTSTSIVYTPLL
SPTTQCLSIGQIVIDSIHHTAQQENTALIEEHLEIVKQFDFIKILSSIEDGIDTNSF---
KTEETLEMLLKSAEYAYKNKNFYQAIFYWQLASNNDLSVL----GYKSLWYYNALNKVKQ
NYKMKYLEINYIERISLYFNDKDKMIWQNIKNDFFKYSLCNQ------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>A1AFL1_ECOK1 (A1AFL1)
MIFDASLKKLRKLFVNPIGFFRDSWFFNSKNKAEELLSPLKIKSKNIFIISNLGQLKKAE
SFVQKFSKRSNYLIVLATEKNTEMPKIIVEQINNKLFSSYKVLFIPTFPNVFSLKKVIWF
YNVYNYLVLNSKAKDAYFMSYAQHYAIFVYLFKKNNIRCSLIEEGTGTYKTEKENPVVNI
N-FY----SE----IINSIILF-HYPDLKFENVYGTYPILLKKKFNAQKFVEFKG-APSV
KSSTRIDNVIHKYSITRDDIIYANQKYLIEHTLFADSLISILLRIDKPDNARIFIKPHPK
EPKKNINAIQKAIK---KAKCRDIILITEPDFLIEPVIKKAKIKHLIGLTSSSLVYAPLV
SKRCQSYSIAPLMIKLCDNDKSQKGINTLRLHFDILKNFDNVKILSDDIT---SPSL---
HDKRI---FLGE------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>Q6VNR6_NEIME (Q6VNR6)
-----MLQKIRKALFHPKKFFQDSQWFATPL-----FSS-FAPKSNLFIISTFAQLNQAH
SLTKM-------------------------------------------------------
------------------------------------------------------------
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----------------------------------------
>Q8VRL9_NEIME (Q8VRL9)
-----MLQKIRKALFHPKKFFQDSQWFATPL-----FSS-FAPKSNLFIISTFAQLNQAH
SLTKMQKLKNNLLVILYTTQNMKMPKLIQKSVDKELFSVTYMFELPRKPGIVSPKKFLYI
QRGYKKLLKTIQPAHLYVMSFAGHYSSLLSLAKKMNITTHLVEEGTATYAPLLESFTYKP
TKFE----QR----FVGNNLHQ-KGYFDKFDILHVAFPEYAKKIFNANEYHRFFAHSGGI
STSQSIAKIQDKYRISQNDYIFVSQRYPVSDEVYYKTIVETLNQMSLRIEGKIFIKLHPK
EMENKNIMSLFLNM---VTINPRLVVINEPPFLIDPLIYLTTPKGIIGLTSTSIVYTPLL
SPTTQCLSIGQIVIDSIHHTAQQENAALIEEHLEIVKQFDFIKILSSIEDGIDTNSF---
KTEETLEMLLKSAEYAYKNKNFYQAIFYWQLASNNDLSVL----GYKSLWYYNALNKVKQ
NYKMKYLEINYIERISLYFNDKDKMIWQNIKNDFFKYSLYNQ------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>Q47404_ECOLX (Q47404)
MIFDASLKKLRKLFVNPIGFFRDSWFFNSKNKAEELLSPLKIKSKNIFIVAHLGQLKKAE
LFIQKFSRRSNFLIVLATKKNTEMPRLILEQMNKKLFSSYKLLFIPTEPNTFSLKKVIWF
YNVYKYIVLNSKAKDAYFMSYAQHYAIFIWLFKKNNIRCSLIEEGTGTYKTEKKKPLVNI
N-FY----SW----IINSIILF-HYPDLKFENVYGTFPNLLKEKFDAKKIFEFKT-IPLV
KSSTRMDNLIHKYRITRDDIIYVSQRYWIDNELYAHLLISTLMRIDKSDNARVFIKPHPK
ETKKYINAIQGAIN---KAKRRDIIIIVEKDFLIESIIKKCKIKHLIGLASSSLVYAPLV
YKECKTYSIAPIIIKLCNNEKSQKGINTLRLHFDILKNFDNVKILSDDIT---SPSL---
HDKRI---FLGE------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>Q83TU5_NEIME (Q83TU5)
-MLKKIK----KALFQPKKFFQDSMWLTTSPF------YLTPPRNNLFVISNLGQLNQVQ
SLIKIQKLTNNLLVILYTSKNLKMPKLVHQSANKNLFESIYLFELPRSPNNITPKKLLYI
YRSYKKILNIIQPAHLYMLSFTGHYSYLISIAKKKNITTHLIDEGTGTYAPLLESFSYHP
TKLE----RY----LIGNNLNI-KGYIDHFDILHVPFPEYAKKIFNAKKYNRFFAHAGGI
SINNNIANLQKKYQISKNDYIFVSQRYPISDDLYYKSIVEILNSISLQIKGKIFIKLHPK
EMGNNYVMSLFLNM---VEINPRLVVINEPPFLIEPLIYLTNPKGIIGLASSSLIYTPLL
SPSTQCLSIGELIINLIQKYSMVENTEMIQEHLEIIKKFNFINILNDLNGVISNPLF---
KTEETFETLLKSAEFAYKSKNYFQAIFYWQLASKNNITLL----GHKALWYYNALYNVKQ
IYKMEYSDIFYIDNISV-------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>B7NIU6_ECO7I (B7NIU6)
MIFDASLKKLRKLFVNPIGFFRDSWFFNSKNKAEELLSPLKIKSKNIFIISNLGQLKKAE
SFVQKFSKRSNYLIVLATEKNTEMPKIIVEQINNKLFSSYKVLFIPTFPNVFSLKKVIWF
YNVYNYLVLNSKAKDAYFMSYAQHYAIFVYLFKKNNIRCSLIEEGTGTYKTEKENPVVNI
NFYS-------EII---NSIILFHYPDLKFENVYGTYPILLKKKFNAQKFVEFKGAP-SV
KSSTRIDNVIHKYSITRDDIIYANQKYLIEHTLFADSLISILLRIDKPDNARIFIKPHPK
EPKKNINA---IQKAIKKAKCRDIILITEPDFLIEPVIKKAKIKHLIGLTSSSLVYAPLV
SKRCQSYSIAPLMIKLCDNDKSQKGINTLRLHFDILKNFDNVKILSDDITS---PSLHDK
------RIFLGE------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>Q57269_ECOLX (Q57269)
MIFDASLKKLRKLFVNPIGFFRDSWFFNSKNKAEELLSPLKIKSKNIFIISNLGQLKKAE
SFVQKFSKRSNYLIVLATEKNTEMPKIIVEQINNKLFSSYKVLFIPTFPNVFSLKKVIWF
YNVYNYLVLNSKAKDAYFMSYAQHYAIFVYLFKKNNIRCSLIEEGTGTYKTEKENPVVNI
NFYS-------EII---NSIILFHYPDLKFENVYGTYPILLKKKFNAQKFVEFKGAP-SV
KSSTRIDNVIHKYSITRDDIIYANQKYLIEHTLFADSLISILLRIDKPDNARIFIKPHPK
EPKKNINA---IQKAIKKAKCRDIILITEPDFLIEPVIKKAKIKHLIGLTSSSLVYAPLV
SKRCQSYSIAPLMIKLCDNDKSQKGINTLRLHFDILKNFDNVKILSDDITS---PSLHDK
------RIFLGE------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>A1KR99_NEIMF (A1KR99)
-MLQKIR----KALFHPKKFFQDSQWFATPLF------SSFAPKSNLFIISTFAQLNQAH
SLTKMQKLKNNLLVILYTTQNMKMPKLIQKSVDKELFSVTYMFELPRKPGIVSPKKFLYI
QRGYKKLLKTIQPAHLYVMSFAGHYSSLLSLAKKMNITTHLVEEGTATYAPLLESFTYKP
TKFE----QR----FVGNNLHQ-KGYFDKFDILHVAFPEYAKKIFNANEYHRFFAHSGGI
STSQSIAKIQDKYRISQNDYIFVSQRYPVSDEVYYKTIVETLNQMSLRIEGKIFIKLHPK
EMENKNIMSLFLNM---VTINPRLVVINEPPFLIDPLIYLTTPKGIIGLTSTSIVYTPLL
SPTTQCLSIGQIVIDSIHHTAQQENTALIEEHLEIVKQFDFIKILSSIEDGIDTNSF---
KTEETLEMLLKSAEYAYKNKNFYQAIFYWQLASNNDLSVL----GYKSLWYYNALNKVKQ
NYKMKYLEINYIERISLYFNDKDKMIWQNIKNDFFKYSLCNQ------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>Q6VNM1_NEIME (Q6VNM1)
------------------------------------------------------------
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-YKMKYLEINYIERISLYFNDKDKMIWQDIKNDFFKYSLCNQ------------------
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----------------------------------------
>Q79AE7_NEIMB (Q79AE7)
-MLKKIK----KALFQPKKFFQDSMWLTTSPF------YLTPPRNNLFVISNLGQLNQVQ
SLIKIQKLTNNLLVILYTSKNLKMPKLVHQSANKNLFESIYLFELPRSPNNITPKKLLYI
YRSYKKILNIIQPAHLYMLSFTGHYSYLISIAK---------------------------
------------------------------------------------------------
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------------------------------------------------------------
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----------------------------------------
>Q4W584_NEIMB (Q4W584)
-MLKKIK----KALFQPKKFFQDSMWLTTSPF------YLTPPRNNLFVISNLGQLNQVQ
SLIKIQKLTNNLLVILYTSKNLKMPKLVHQSANKNLFESIYLFELPRSPNNITPKKLLYI
YRSYKKILNIIQPAHLYMLSFTGHYSYLISIAKKKNITTHLIDEGTGTYAPLLESFSYHP
TKLE----RY----LIGNNLNI-KGYIDHFDILHVPFPEYAKKIFNAKKYNRFFAWRKGD
VLQGD-------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>C5ZW53_9HELI (C5ZW53)
-MLEVARKKLSGLMQDIKEYFVSSEYEMMFYK------KELNQCNNVFYISNLGQLKQVE
TLIEFEELSNNCLVIGYTRANLEMPDFILDKADKRKFQNIILVELVVSVNYLKPGRIKQI
CRIYKKLSQNIETKELYLLSVEGHYGIFAHYMKQKGVLINLLEEGTATYKFELKNGKIHV
NAPAVRMGRYTEIFCTLSGIKN-MLLVGEFNKIYAAFPEKLRGIFKANEIILFFAHIN-I
KPSANLVEIIEKYKITGDDIIFVSQRFDIDLNIFIEKILDILEAYVVAYRQRVFVKHHPK
ESEKQI--SLFRSKIIARGFSQNIISVSDKAFLVENILDIVETKILVGLTSTSLIYAQKL
NKDIVVHSVVPWFLKKVFFLEKQKKQMLSSHFNELQKTFDGFKIIEDAGAIVAGDICSDT
PKNSDATALIDKANQGFVEKKILQAIFYYKQSESKDIFLRMPHILYNMLYCWDALENDFQ
KYRIII---KYLQLDVVLEKKEEEFVFAKLMQ---FVDMCLREGKFEKFEKIEQLALAKQ
EKFLYFDVGVIRLKKMLYLERWDDVLRAFEDLRESSKKRYFIVFEIVRSFIREENMEFEE
ELKEIDDRVVGESLKLLYLYSCKKYSDIYDYIVEIKDANPYLYQQYHNKIIIQKKYSTLI
ESFNVDNILEYMINNEKKQFFAEVSDVLSKYNVEYRIGDIIEALNGDQIKLKTQDMEDLI
CALKGFEGLAEFCKREDDMGLICRILTFEFAGNLLENERS
>C9X1J6_NEIM8 (C9X1J6)
-MLQKIR----KALFHPKKFFQDSQWFATPLF------SSFAPKSNLFIISTFAQLNQAH
SLTKMQKLKNNLLVILYTTQNMKMPKLIQKSVDKELFSVTYMFELPRKPGIVSPKKFLYI
QRGYKKLLKTIQPAHLYVMSFAGHYSSLLSLAKKMNITTHLVEEGTATYAPLLESFTYKP
TKFE----QR----FVGNNLHQ-KGYFDKFDILHVAFPEYAKKIFNANEYHRFFAHSGGI
STSQSIAKIQDKYRISQNDYIFVSQRYPVSDEVYYKTIVETLNQMSLRIEGKIFIKLHPK
EMENKNIMSLFLNM---VTINPRLVVINEPPFLIDPLIYLTTPKGIIGLTSTSIVYTPLL
SPTTQCLSIGQIVIDSIHHTAQQENTALIEEHLEIVKQFDFIKILSSIEDGIDTNSF---
KTEETLEMLLKSAEYAYKNKNFYQAIFYWQLASNNDLSVL----GYKSLWHYNALNKVKQ
NYKMKYLEINYIERISLYFNDKDKMIWQNIKNDFFKYSLCNQ------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>C1HI22_9ESCH (C1HI22)
MIFDASLKKLRKLFVNPIGFFRDSWFFNSKNKAEELLSPLKIKSKNIFIISNLGQLKKAE
SFVQKFSKRSNYLIVLATEKNTEMPKIIVEQINNKLFSSYKVLFIPTFPNVFSLKKVIWF
YNVYNYLVLNSKAKDAYFMSYAQHYAIFVYLFKKNNIRCSLIEEGTGTYKTEKENPVVNI
NFYS-------EII---NSIILFHYPDLKFENVYGTYPILLKKKFNAQKFVEFKGAP-SV
KSSTRIDNVIHKYSITRDDIIYANQKYLIEHTLFADSLISILLRIDKPDNARIFIKPHPK
EPKKNINA---IQKAIKKAKCRDIILITEPDFLIEPVIKKAKIKHLIGLTSSSLVYAPLV
SKRCQSYSIAPLMIKLCDNDKSQKGINTLRLHFDILKNFDNVKILSDDITS---PSLHDK
------RIFLGE------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>Q51281_NEIME (Q51281)
-MLKKIK----KALFQPKKFFQDSMWLTTSPF------YLTPPRNNLFVISNLGQLNQVQ
SLIKIQKLTNNLLVILYTSKNLKMPKLVHQSANKNLFESIYLFELPRSPNNITPKKLLYI
YRSYKKILNIIQPAHLYMLSFTGHYSYLISIAKKKNITTHLIDEGTGTYAPLLESFSYHP
TKLE----RY----LIGNNLNI-KGYIDHFDILHVPFPEYAKKIFNAKKYNRFFAHAGGI
SINNNIANLQKKYQISKNDYIFVSQRYPISDDLYYKSIVEILNSISLQIKGKIFIKLHPK
EMGNNYVMSLFLNM---VEINPRLVVINEPPFLIEPLIYLTNPKGIIGLASSSLIYTPLL
SPSTQCLSIGELIINLIQKYSMVENTEMIQEHLEIIKKFNFINILNDLNGVISNPLF---
KTEETFETLLKSAEFAYKSKNYFQAIFYWQLASKNNITLL----GHKALWYYNALYNVKQ
IYKMEYSDIFYIDNISVDFHSKDKLTWEKIKHYYYSADNRIGRDR---------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------
>Q6VNM8_NEIME (Q6VNM8)
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
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-YKMKYLEINYIERISLYFNDKDKMIWQNIKNDFFKYSLCNQ------------------
------------------------------------------------------------
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----------------------------------------