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1 ## htsjdk.samtools.metrics.StringHeader
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2 # picard.analysis.CollectWgsMetrics INPUT=/Users/anton/galaxy-central/database/files/000/dataset_773.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_802.dat REFERENCE_SEQUENCE=localref.fa MINIMUM_MAPPING_QUALITY=20 MINIMUM_BASE_QUALITY=20 COVERAGE_CAP=250 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=-1 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
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3 ## htsjdk.samtools.metrics.StringHeader
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4 # Started on: Tue Oct 07 15:46:29 EDT 2014
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5
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6 ## METRICS CLASS picard.analysis.CollectWgsMetrics$WgsMetrics
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7 GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X
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8 16568 2.915983 3.836089 2 2 0 0 0 0 0.008069 0 0.008069 0.240464 0.055831 0.02541 0.011045 0 0 0 0 0 0 0 0 0
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9
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10 ## HISTOGRAM java.lang.Integer
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11 coverage count
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12 0 5225
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13 1 3010
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14 2 1806
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15 3 1333
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16 4 1210
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17 5 1247
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18 6 672
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19 7 468
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20 8 361
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21 9 311
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22 10 210
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23 11 95
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24 12 78
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25 13 52
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26 14 69
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27 15 64
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28 16 29
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29 17 31
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30 18 53
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31 19 61
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32 20 65
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33 21 74
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34 22 32
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35 23 12
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36 24 0
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263
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