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comparison test-data/picard_CollectBaseDistributionByCycle_test1.tab @ 33:3f254c5ced1d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
author iuc
date Sun, 03 Mar 2024 16:06:11 +0000
parents 5053a18d9bc8
children
comparison
equal deleted inserted replaced
32:f9242e01365a 33:3f254c5ced1d
1 ## htsjdk.samtools.metrics.StringHeader 1 ## htsjdk.samtools.metrics.StringHeader
2 # CollectBaseDistributionByCycle CHART_OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_16.dat ALIGNED_READS_ONLY=true PF_READS_ONLY=true INPUT=picard_CollectBaseDistributionByCycle_bam OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_15.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 2 # CollectBaseDistributionByCycle CHART_OUTPUT=/tmp/tmpo37chtct/job_working_directory/000/107/outputs/dataset_99eaaacb-471a-4904-8457-922748bbe739.dat ALIGNED_READS_ONLY=true PF_READS_ONLY=true INPUT=picard_CollectBaseDistributionByCycle_bam OUTPUT=/tmp/tmpo37chtct/job_working_directory/000/107/outputs/dataset_00637765-dbfa-4415-ac2b-3abf35106022.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
3 ## htsjdk.samtools.metrics.StringHeader 3 ## htsjdk.samtools.metrics.StringHeader
4 # Started on: Sat Apr 14 09:27:50 CEST 2018 4 # Started on: Sat Mar 02 14:54:57 GMT 2024
5 5
6 ## METRICS CLASS picard.analysis.BaseDistributionByCycleMetrics 6 ## METRICS CLASS picard.analysis.BaseDistributionByCycleMetrics
7 READ_END CYCLE PCT_A PCT_C PCT_G PCT_T PCT_N 7 READ_END CYCLE PCT_A PCT_C PCT_G PCT_T PCT_N
8 1 1 21 22 29 28 0 8 1 1 21 22 29 28 0
9 1 2 49 13 12 26 0 9 1 2 49 13 12 26 0