Mercurial > repos > peterjc > seq_filter_by_id

comparison tools/seq_filter_by_id/README.rst @ 4:1c36cf8ef133 draft

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Uploaded v0.0.7 fixed dependency on Biopython 1.62
author peterjc
date Wed, 30 Jul 2014 06:39:53 -0400
parents 44ab4c0f7683
children 832c1fd57852
comparison
equal deleted inserted replaced
3:44ab4c0f7683 4:1c36cf8ef133
69 - Use reStructuredText for this README file. 69 - Use reStructuredText for this README file.
70 - Adopt standard MIT License. 70 - Adopt standard MIT License.
71 - Updated citation information (Cock et al. 2013). 71 - Updated citation information (Cock et al. 2013).
72 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy 72 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy
73 - Renamed folder and adopted README.rst naming. 73 - Renamed folder and adopted README.rst naming.
74 v0.0.7 - Correct automated dependency definition.
74 ======= ====================================================================== 75 ======= ======================================================================
75 76
76 77
77 78
78 Developers 79 Developers
86 https://github.com/peterjc/pico_galaxy/tree/master/tools 87 https://github.com/peterjc/pico_galaxy/tree/master/tools
87 88
88 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use 89 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
89 the following command from the Galaxy root folder:: 90 the following command from the Galaxy root folder::
90 91
91 $ tar -czf seq_filter_by_id.tar.gz tools/seq_filter_by_id/README.rst tools/seq_filter_by_id/seq_filter_by_id.* tools/seq_filter_by_id/repository_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular 92 $ tar -czf seq_filter_by_id.tar.gz tools/seq_filter_by_id/README.rst tools/seq_filter_by_id/seq_filter_by_id.* tools/seq_filter_by_id/tool_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular
92 93
93 Check this worked:: 94 Check this worked::
94 95
95 $ tar -tzf seq_filter_by_id.tar.gz 96 $ tar -tzf seq_filter_by_id.tar.gz
96 tools/seq_filter_by_id/README.rst 97 tools/seq_filter_by_id/README.rst
97 tools/seq_filter_by_id/seq_filter_by_id.py 98 tools/seq_filter_by_id/seq_filter_by_id.py
98 tools/seq_filter_by_id/seq_filter_by_id.xml 99 tools/seq_filter_by_id/seq_filter_by_id.xml
99 tools/seq_filter_by_id/repository_dependencies.xml 100 tools/seq_filter_by_id/tool_dependencies.xml
100 test-data/k12_ten_proteins.fasta 101 test-data/k12_ten_proteins.fasta
101 test-data/k12_hypothetical.fasta 102 test-data/k12_hypothetical.fasta
102 test-data/k12_hypothetical.tabular 103 test-data/k12_hypothetical.tabular
103 104
104 105