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Repository metadata is associated with this change set.

Description: bugfix

Commit: 27:576bfc1586f9

Parent: 26:859999cb135b

Commited by: b'geert-vandeweyer'

Pushed: 2017-11-29

Description: revised routines. Better handling of collapsing, isoforms and mutiple mapppings. Barplots revised to visualise average base coverage in exon instead of total number of reads in exon

Commit: 26:859999cb135b

Parent: 25:6cb012c8497a

Commited by: b'geert-vandeweyer'

Pushed: 2017-11-29

Description: Added BED format check before collapsing regions.

Commit: 25:6cb012c8497a

Parent: 24:fd788f9db899

Commited by: b'geert-vandeweyer'

Pushed: 2015-02-12

Description: Added (default) option to collapse repetitive bed files

Commit: 24:fd788f9db899

Parent: 23:a718420c834e

Commited by: b'geert-vandeweyer'

Pushed: 2015-02-12

Description: Added (default) option to collapse repetitive BED files.

Commit: 23:a718420c834e

Parent: 22:95062840f80f

Commited by: b'geert-vandeweyer'

Pushed: 2015-02-12

Description: Correction to png calls to use cairo instead of x11. thanks to Eric Enns for pointing this out.

Commit: 22:95062840f80f

Parent: 21:06ccf2048b8f

Commited by: b'geert-vandeweyer'

Pushed: 2014-11-17

Description: Correction of tool_dependencies regarding R version

Commit: 21:06ccf2048b8f

Parent: 20:b8e4ed167120

Commited by: b'geert-vandeweyer'

Pushed: 2014-11-06

Repository metadata is associated with this change set.

Description: changed tool.xml to request R 3.0.3

Commit: 20:b8e4ed167120

Parent: 19:6c7b09220992

Commited by: b'geert-vandeweyer'

Pushed: 2014-11-06

Description: new version 0.0.3 (fix on headless R)

Commit: 19:6c7b09220992

Parent: 18:43427b07e6bb

Commited by: b'geert-vandeweyer'

Pushed: 2014-11-06

Repository metadata is associated with this change set.

Description: Uploaded

Commit: 18:43427b07e6bb

Parent: 17:8ebd390f509a

Commited by: b'geert-vandeweyer'

Pushed: 2014-06-18

Description: Uploaded

Commit: 17:8ebd390f509a

Parent: 16:d19e2109717b

Commited by: b'geert-vandeweyer'

Pushed: 2014-06-18

Repository metadata is associated with this change set.

Description: correcting tool_dependencies

Commit: 16:d19e2109717b

Parent: 15:a24c8e81cee0

Commited by: b'geert-vandeweyer'

Pushed: 2014-06-18

Repository metadata is associated with this change set.

Description: Uploaded

Commit: 15:a24c8e81cee0

Parent: 14:cdec7fab3373

Commited by: b'geert-vandeweyer'

Pushed: 2014-06-18

Description: Somehow the tool dependencies got reversed to an old version leading to issues with R png function

Commit: 14:cdec7fab3373

Parent: 13:a030e3cd3da5

Commited by: b'geert-vandeweyer'

Pushed: 2014-06-18

Description: Uploaded

Commit: 13:a030e3cd3da5

Parent: 12:86df3f847a72

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-20

Repository metadata is associated with this change set.

Description: Switched to R 3.0.2 from iuc, and moved bedtools to seperate tool_definition

Commit: 12:86df3f847a72

Parent: 11:2936bcb2a378

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-20

Repository metadata is associated with this change set.

Description: Hard Coded to use /usr/bin/Rscript instead of dependency one. Will revert when X11 issue is resolved.

Commit: 11:2936bcb2a378

Parent: 10:1400dbec671f

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-17

Description: update to dependencies.xml

Commit: 10:1400dbec671f

Parent: 9:4d4054a97b40

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-14

Description: Uploaded

Commit: 9:4d4054a97b40

Parent: 8:295b3112ca8f

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-14

Repository metadata is associated with this change set.

Description: Change to tool_dependencies. BedTools would not install.

Commit: 8:295b3112ca8f

Parent: 7:6808c39f34cd

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-13

Description: Uploaded

Commit: 7:6808c39f34cd

Parent: 6:bad3cf52d6e1

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-13

Description: Deleted selected files

Commit: 6:bad3cf52d6e1

Parent: 5:26a5b8623597

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-13

Description: Uploaded

Commit: 5:26a5b8623597

Parent: 4:2799221681dd

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-13

Description: Uploaded

Commit: 4:2799221681dd

Parent: 3:39c374d4cba7

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-13

Repository metadata is associated with this change set.

Description: Uploaded

Commit: 3:39c374d4cba7

Parent: 2:a9555d172896

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-13

Description: Uploaded

Commit: 2:a9555d172896

Parent: 1:864d0ccfbe6f

Commited by: b'geert-vandeweyer'

Pushed: 2014-02-13

Description: Initial Uploaded

Commit: 1:864d0ccfbe6f

Parent: 0:ea32a329aced

Commited by: b'geert-vandeweyer'

Pushed: 2013-09-05

Description: Initial Uploaded

Commit: 0:ea32a329aced

Parent: None

Commited by: b'geert-vandeweyer'

Pushed: 2013-09-05