| Previous changeset 13:dc958c2a963a (2013-04-23) Next changeset 15:6abd809cefdd (2013-04-25) |
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Commit message:
Uploaded v0.2.3, adds unit tests for WoLF PSORT |
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modified:
tools/protein_analysis/README tools/protein_analysis/wolf_psort.xml |
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added:
test-data/empty_wolf_psort.tabular test-data/four_human_proteins.wolf_psort.tabular |
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| diff -r dc958c2a963a -r 6365217cd3de test-data/empty_wolf_psort.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/empty_wolf_psort.tabular Thu Apr 25 11:54:47 2013 -0400 |
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| @@ -0,0 +1,1 @@ +#ID Compartment Score Rank |
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| diff -r dc958c2a963a -r 6365217cd3de test-data/four_human_proteins.wolf_psort.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/four_human_proteins.wolf_psort.tabular Thu Apr 25 11:54:47 2013 -0400 |
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| @@ -0,0 +1,15 @@ +#ID Compartment Score Rank +sp|Q9BS26|ERP44_HUMAN extr 18 1 +sp|Q9BS26|ERP44_HUMAN E.R. 5 2 +sp|Q9BS26|ERP44_HUMAN plas 3 3 +sp|Q9BS26|ERP44_HUMAN mito 2 4 +sp|Q9BS26|ERP44_HUMAN lyso 2 5 +sp|Q9NSY1|BMP2K_HUMAN nucl 25 1 +sp|Q9NSY1|BMP2K_HUMAN cyto_nucl 17 2 +sp|Q9NSY1|BMP2K_HUMAN cyto 7 3 +sp|P06213|INSR_HUMAN extr_plas 11.5 1 +sp|P06213|INSR_HUMAN plas 10.5 2 +sp|P06213|INSR_HUMAN extr 9.5 3 +sp|P06213|INSR_HUMAN pero 5 4 +sp|P06213|INSR_HUMAN E.R. 4 5 +sp|P08100|OPSD_HUMAN plas 32 1 |
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| diff -r dc958c2a963a -r 6365217cd3de tools/protein_analysis/README --- a/tools/protein_analysis/README Tue Apr 23 12:47:49 2013 -0400 +++ b/tools/protein_analysis/README Thu Apr 25 11:54:47 2013 -0400 |
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| @@ -141,6 +141,7 @@ v0.2.1 - Use a script to create the Tool Shed tar-ball (removed some stray files accidentally included previously via a wildcard). v0.2.2 - Include missing test files. +v0.2.3 - Added unit tests for WoLF PSORT. Developers |
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| diff -r dc958c2a963a -r 6365217cd3de tools/protein_analysis/wolf_psort.xml --- a/tools/protein_analysis/wolf_psort.xml Tue Apr 23 12:47:49 2013 -0400 +++ b/tools/protein_analysis/wolf_psort.xml Thu Apr 25 11:54:47 2013 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="wolf_psort" name="WoLF PSORT" version="0.0.3"> +<tool id="wolf_psort" name="WoLF PSORT" version="0.0.4"> <description>Eukaryote protein subcellular localization prediction</description> <command interpreter="python"> wolf_psort.py $organism 8 $fasta_file $tabular_file @@ -23,6 +23,28 @@ <requirements> <requirement type="binary">runWolfPsortSummary</requirement> </requirements> + <tests> + <test> + <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta"/> + <param name="organism" value="animal"/> + <output name="tabular_file" file="four_human_proteins.wolf_psort.tabular" ftype="tabular"/> + </test> + <test> + <param name="fasta_file" value="empty.fasta" ftype="fasta"/> + <param name="organism" value="animal"/> + <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> + </test> + <test> + <param name="fasta_file" value="empty.fasta" ftype="fasta"/> + <param name="organism" value="plant"/> + <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> + </test> + <test> + <param name="fasta_file" value="empty.fasta" ftype="fasta"/> + <param name="organism" value="fungi"/> + <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> + </test> + </tests> <help> **What it does** |