| Previous changeset 14:6365217cd3de (2013-04-25) Next changeset 16:7de64c8b258d (2013-09-18) |
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Commit message:
Uploaded v0.2.4, added unit tests for Promoter 2 |
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modified:
tools/protein_analysis/README tools/protein_analysis/promoter2.xml |
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added:
test-data/Adenovirus.fasta test-data/Adenovirus.promoter2.tabular test-data/empty_promoter2.tabular |
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| diff -r 6365217cd3de -r 6abd809cefdd test-data/Adenovirus.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Adenovirus.fasta Thu Apr 25 12:25:52 2013 -0400 |
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| @@ -0,0 +1,21 @@ +>gi_209811_gb_J01917_ADRCG Adenovirus type 2, complete genome. +CATCATCATAATATACCTTATTTTGGATTGAAGCCAATATGATAATGAGGGGGTGGAGTT +TGTGACGTGGCGCGGGGCGTGGGAACGGGGCGGGTGACGTAGTAGTGTGGCGGAAGTGTG +ATGTTGCAAGTGTGGCGGAACACATGTAAGCGCCGGATGTGGTAAAAGTGACGTTTTTGG +TGTGCGCCGGTGTATACGGGAAGTGACAATTTTCGCGCGGTTTTAGGCGGATGTTGTAGT +AAATTTGGGCGTAACCAAGTAATGTTTGGCCATTTTCGCGGGAAAACTGAATAAGAGGAA +GTGAAATCTGAATAATTCTGTGTTACTCATAGCGCGTAATATTTGTCTAGGGCCGCGGGG +ACTTTGACCGTTTACGTGGAGACTCGCCCAGGTGTTTTTCTCAGGTGTTTTCCGCGTTCC +GGGTCAAAGTTGGCGTTTTATTATTATAGTCAGCTGACGCGCAGTGTATTTATACCCGGT +GAGTTCCTCAAGAGGCCACTCTTGAGTGCCAGCGAGTAGAGTTTTCTCCTCCGAGCCGCT +CCGACACCGGGACTGAAAATGAGACATATTATCTGCCACGGAGGTGTTATTACCGAAGAA +ATGGCCGCCAGTCTTTTGGACCAGCTGATCGAAGAGGTACTGGCTGATAATCTTCCACCT +CCTAGCCATTTTGAACCACCTACCCTTCACGAACTGTATGATTTAGACGTGACGGCCCCC +GAAGATCCCAACGAGGAGGCGGTTTCGCAGATTTTTCCCGAGTCTGTAATGTTGGCGGTG +CAGGAAGGGATTGACTTATTCACTTTTCCGCCGGCGCCCGGTTCTCCGGAGCCGCCTCAC +CTTTCCCGGCAGCCCGAGCAGCCGGAGCAGAGAGCCTTGGGTCCGGTTTCTATGCCAAAC +CTTGTGCCGGAGGTGATCGATCTTACCTGCCACGAGGCTGGCTTTCCACCCAGTGACGAC +GAGGATGAAGAGGGTGAGGAGTTTGTGTTAGATTATGTGGAGCACCCCGGGCACGGTTGC +AGGTCTTGTCATTATCACCGGAGGAATACGGGGGACCCAGATATTATGTGTTCGCTTTGC +TATATGAGGACCTGTGGCATGTTTGTCTACAGTAAGTGAAAATTATGGGCAGTCGGTGAT +AGAGTGGTGGGTTTGGTGTGGTAATTTTTTTTTAATTTTTACAGTTTTGTGGTTTAAAGA |
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| diff -r 6365217cd3de -r 6abd809cefdd test-data/Adenovirus.promoter2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Adenovirus.promoter2.tabular Thu Apr 25 12:25:52 2013 -0400 |
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| @@ -0,0 +1,2 @@ +#Identifier Position Score Likelihood +gi_209811_gb_J01917_ADRCG 600 1.063 Highly likely prediction |
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| diff -r 6365217cd3de -r 6abd809cefdd test-data/empty_promoter2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/empty_promoter2.tabular Thu Apr 25 12:25:52 2013 -0400 |
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| @@ -0,0 +1,1 @@ +#Identifier Position Score Likelihood |
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| diff -r 6365217cd3de -r 6abd809cefdd tools/protein_analysis/README --- a/tools/protein_analysis/README Thu Apr 25 11:54:47 2013 -0400 +++ b/tools/protein_analysis/README Thu Apr 25 12:25:52 2013 -0400 |
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| @@ -142,6 +142,7 @@ files accidentally included previously via a wildcard). v0.2.2 - Include missing test files. v0.2.3 - Added unit tests for WoLF PSORT. +v0.2.4 - Added unit tests for Promoter 2 Developers |
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| diff -r 6365217cd3de -r 6abd809cefdd tools/protein_analysis/promoter2.xml --- a/tools/protein_analysis/promoter2.xml Thu Apr 25 11:54:47 2013 -0400 +++ b/tools/protein_analysis/promoter2.xml Thu Apr 25 12:25:52 2013 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="promoter2" name="Promoter 2.0" version="0.0.3"> +<tool id="promoter2" name="Promoter 2.0" version="0.0.4"> <description>Find eukaryotic PolII promoters in DNA sequences</description> <!-- If job splitting is enabled, break up the query file into parts --> <!-- Using 2000 per chunk so 4 threads each doing 500 is ideal --> @@ -23,6 +23,16 @@ <requirements> <requirement type="binary">promoter</requirement> </requirements> + <tests> + <test> + <param name="fasta_file" value="Adenovirus.fasta" ftype="fasta"/> + <output name="tabular_file" file="Adenovirus.promoter2.tabular" ftype="tabular"/> + </test> + <test> + <param name="fasta_file" value="empty.fasta" ftype="fasta"/> + <output name="tabular_file" file="empty_promoter2.tabular" ftype="tabular"/> + </test> + </tests> <help> **What it does** |