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Repository ncbi_sra_toolkit
Owner: matt-shirley
Synopsis: NCBI Sequence Read Archive toolkit utilities
Please use https://toolshed.g2.bx.psu.edu/view/mvdbeek/sra_tools/9f74a22d2060 as this repository is no longer maintained.

The Galaxy tool wrappers contained in this tool shed repository rely on software developed by 
the NCBI Sequence Read Archive: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. 
Use of SRA Toolkit software herin should comply with the GPL v2 or greater.

Copyright (C) 2013  Matthew Shirley

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 2 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
    
INSTALLATION

This software release was designed to run under Linux, MacOSX operating systems on Intel x86-compatible 64 bit architectures.

Build Requirements:
  ar 
  bash
  make
  gcc, g++
  libxml2
  libcurl4
  zlib
  
On a debian based Linux OS use:

  apt-get install build-essential libxml2-dev libcurl4-openssl-dev zlib-dev
  
CONTROLLED-ACCESS DATA

Encrypted, controlled-access data is not supported in this version of the SRA Toolkit Galaxy tool shed.
Type: unrestricted
Revision: 29:ce2bb7841f17
This revision can be installed: True
Times cloned / installed: 601
Dependencies of this repository

Name Version Type
sra_toolkit 2.4.5 package

Contents of this repository

Name Description Version Minimum Galaxy Version
in BAM format from NCBI SRA. 1.1.2 any
in FASTQ/A format from NCBI SRA. 1.1.2 any
in SAM format from NCBI SRA. 1.1.2 any
from NCBI sra. 1.1.1 any

Categories
Convert Formats - Tools for converting data formats
Data Source - Tools for retrieving data from external data sources