Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository sam_to_bam
Name: sam_to_bam
Owner: devteam
Synopsis: Convert SAM format to BAM format.
This tool uses the SAMtools toolkit to produce an indexed BAM file based on a sorted input SAM file.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/sam_to_bam/881e16ad05c6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam
Type: unrestricted
Revision: 7:881e16ad05c6
This revision can be installed: True
Times cloned / installed: 11884
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
convert SAM to BAM 2.1 any

Categories
SAM - Tools for manipulating alignments in the SAM format