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Repository nlstradamus
Name: nlstradamus
Owner: peterjc
Synopsis: Find nuclear localization signals (NLSs) in protein sequences
Wraps the NLStradamus tool for prediction of nuclear localization signals (NLSs),
which uses a Hidden Markov Model (HMM).

Takes a FASTA file of proteins as input, returns a tabular file as output.

Requires the C++ version of NLStradamus, included with NLStradamus 1.7 (or later).

http://www.moseslab.csb.utoronto.ca/NLStradamus
Content homepage: http://www.moseslab.csb.utoronto.ca/NLStradamus
Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/nlstradamus
Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/nlstradamus/e8f15b0136cd
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/nlstradamus
Type: unrestricted
Revision: 5:e8f15b0136cd
This revision can be installed: True
Times cloned / installed: 1593
Dependencies of this repository

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Name Version Type
NLStradamus 1.8 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
Find nuclear localization signals (NLSs) in protein sequences 0.0.10 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Fasta Manipulation - Tools for manipulating fasta data