Repository pileup_parser
Name: pileup_parser
Owner: devteam
Synopsis: Filter pileup on coverage and SNPs
Allows one to find sequence variants and/or sites covered by a
specified number of reads with bases above a set quality threshold. The tool works
on six and ten column pileup formats produced with *samtools pileup* command. However,
it also allows you to specify columns in the input file manually.
Content homepage: https://github.com/galaxyproject/tools-devteam/
Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/pileup_parser
Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/pileup_parser/85bedbea8a12
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/pileup_parser
Type: unrestricted
Revision: 2:85bedbea8a12
This revision can be installed: True
Times cloned / installed: 3013

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
on coverage and SNPs 1.0.2 any

Categories
SAM - Tools for manipulating alignments in the SAM format