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Repository samtools_bedcov

Name: samtools_bedcov

Owner: devteam

Synopsis: Calculate read depth on BAM files

Detailed description:

This tool uses the SAMtools toolkit to produce read depth per BED region.

Content homepage: http://www.htslib.org/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_bedcov

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_bedcov/46c6639921f1

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov

Type: unrestricted

Revision: 4:46c6639921f1

This revision can be installed: True

Times cloned / installed: 7400

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Samtools bedcov View tool metadata	calculate read depth for a set of genomic intervals	2.0.3	20.05