Mercurial > repos > alenail > chipsequtil
comparison chipsequtil/pieplot_macs/pieplots_macs.xml @ 22:63dace20719b draft
Uploaded
author | alenail |
---|---|
date | Wed, 13 Apr 2016 17:36:07 -0400 |
parents | |
children | dd504ac7bf6d |
comparison
equal
deleted
inserted
replaced
21:248c4538e4ce | 22:63dace20719b |
---|---|
1 <tool id="pieplots_macs" name="Pieplots MACS" version="0.1"> | |
2 <description> | |
3 Peaks are assigned to the closest gene and then categorized according to their location at different genomic regions (promoter, intron, exon, or after the gene). Sites >10kb away from any gene are considered intergenic. | |
4 </description> | |
5 <parallelism method="basic"></parallelism> | |
6 <requirements> | |
7 <requirement type="package" version="1.2.1">matplotlib</requirement> | |
8 <requirement type="package">pandas</requirement> | |
9 </requirements> | |
10 <command interpreter="python"> | |
11 pieplots_macs.py genefile $genefilepeakfile $peakfile $MACSoutfile $out | |
12 </command> | |
13 <inputs> | |
14 <param name="genefile" type="data" label="genefile file" help="" optional="false" /> | |
15 <param name="peakfile" type="data" label="peakfile xRef file" help="" optional="false" /> | |
16 <param name="MACS" checked="false" label="Set this value if you have MACS peaks" type="boolean" truevalue="--MACS" falsevalue="" help="" /> | |
17 </inputs> | |
18 <outputs> | |
19 <data name="out" format="pdf" hidden="false" /> | |
20 </outputs> | |
21 <help></help> | |
22 </tool> |