changeset 8:a30aa2806375 draft

author alenail
date Mon, 04 Apr 2016 15:02:03 -0400
parents 007d99e2ae91
children 1c6c8591f760
files chipsequtil/ chipsequtil/._map_to_known_genes.xml chipsequtil/map_to_known_genes.xml
diffstat 3 files changed, 1 insertions(+), 2 deletions(-) [+]
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Binary file chipsequtil/ has changed
Binary file chipsequtil/._map_to_known_genes.xml has changed
--- a/chipsequtil/map_to_known_genes.xml	Mon Apr 04 14:56:57 2016 -0400
+++ b/chipsequtil/map_to_known_genes.xml	Mon Apr 04 15:02:03 2016 -0400
@@ -23,7 +23,6 @@
     <param name="knownGeneFile" type="data" label="knownGene file" help="" optional="false" />
     <param name="knownGeneRef" type="data" label="knownGene xRef file" help="" optional="false" />
     <param name="macsPeaksFile" type="data" label="Peaks File" help="" optional="false" />
-    <param name="peaksOutput" type="text" label="Output filename" help="filename to output mapped peaks to" optional="false" />
     <param name="upst_win" type="integer" label="Upstream Window" help="Window width in base pairs to consider promoter region [default: %default]" optional="false" value="5500" />
     <param name="dnst_win" type="integer" label="Downstream Window" help="Window width in base pairs to consider downstream region [default: %default]" optional="false" value="2500" />
@@ -39,7 +38,7 @@
     <param name="intergenic" checked="false" label="Write intergenic peaks to the gene file as well with None as gene ID" type="boolean" truevalue="--intergenic" falsevalue="" help="" />
-    <data format="txt" hidden="false" name="default"/>
+    <data format="txt" hidden="false" name="peaksOutput"/>