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1 <tool id="extractCentralRegions" name="ExtractCentralRegions" version="1.0">
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2 <description>Extract regions around peak maxima for a .bed file with peak coordinates</description>
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3 <command interpreter="perl">extractCentralRegions.pl -f $inputfile -l $left -o $output -head $has_header
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4 </command>
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5 <inputs>
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6
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7 <param name="inputfile" type="data" label="ChIP peaks" value="ChIP peaks File" format="bed,txt"/>
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8 <param name="has_header" type="select" label="Your data file has a header?">
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9 <option value="0" selected="true">No</option>
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10 <option value="1">Yes</option>
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11 </param>
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12 <param name="left" type="integer" label="Legth of the central region" value="300"/>
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13 </inputs>
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14 <outputs>
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15 <data name="output" format="bed" label="central regions for ${inputfile.name}"/>
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16 </outputs>
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17 <help>
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18 **What it does**
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19
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20 This tool extract central regions of ChIP-seq peaks
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21
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22 </help>
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23 </tool>
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