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changeset 4:88dc16b4f583 draft

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"Fix number of allowed different lines in `galaxy/gecco.xml` tests"
author althonos
date Sat, 11 Dec 2021 23:31:48 +0000
parents 359232b58f6a
children 169849dfb098
files gecco.xml test-data/BGC0001866.1_cluster_1.gbk test-data/sideload.json
diffstat 3 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/gecco.xml	Sun Nov 21 19:47:22 2021 +0000
+++ b/gecco.xml	Sat Dec 11 23:31:48 2021 +0000
@@ -62,7 +62,7 @@
             <output name="features" file="features.tsv"/>
             <output name="clusters" file="clusters.tsv"/>
             <output_collection name="records" type="list">
-                <element name="BGC0001866.1_cluster_1" file="BGC0001866.1_cluster_1.gbk" ftype="genbank" lines_diff="2"/>
+                <element name="BGC0001866.1_cluster_1" file="BGC0001866.1_cluster_1.gbk" ftype="genbank" compare="diff" lines_diff="4"/>
             </output_collection>
         </test>
         <test>
@@ -72,7 +72,7 @@
             <output name="clusters" file="clusters.tsv"/>
             <output name="sideload" file="sideload.json"/>
             <output_collection name="records" type="list">
-                <element name="BGC0001866.1_cluster_1" file="BGC0001866.1_cluster_1.gbk" ftype="genbank" lines_diff="2"/>
+                <element name="BGC0001866.1_cluster_1" file="BGC0001866.1_cluster_1.gbk" ftype="genbank" compare="diff" lines_diff="4"/>
             </output_collection>
         </test>
     </tests>
--- a/test-data/BGC0001866.1_cluster_1.gbk	Sun Nov 21 19:47:22 2021 +0000
+++ b/test-data/BGC0001866.1_cluster_1.gbk	Sat Dec 11 23:31:48 2021 +0000
@@ -15,7 +15,7 @@
   JOURNAL   bioRxiv (2021.05.03.442509)
   REMARK    doi:10.1101/2021.05.03.442509
 COMMENT     ##GECCO-Data-START##
-            version                :: GECCO v0.8.4
+            version                :: GECCO v0.8.5
             creation_date          :: 2021-11-21T16:33:58.470847
             biosyn_class           :: Polyketide
             alkaloid_probability   :: 0.0
--- a/test-data/sideload.json	Sun Nov 21 19:47:22 2021 +0000
+++ b/test-data/sideload.json	Sat Dec 11 23:31:48 2021 +0000
@@ -31,6 +31,6 @@
         },
         "description": "Biosynthetic Gene Cluster prediction with Conditional Random Fields.",
         "name": "GECCO",
-        "version": "0.8.4"
+        "version": "0.8.5"
     }
 }
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