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annotate Tools/Second/remove_motifs_v2.xml @ 3:b30ba2b06326 draft

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author amadeo
date Mon, 05 Sep 2016 06:01:48 -0400
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1 <tool id="remove_same_dif_motifs" name="Remove motifs overlaped" version="1.0.0">
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2 <description>Script to compare contigous motifs in gff file and, in case that two overlap, remove the motif with the highest p value</description>
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3 <command interpreter="perl">remove_motifs_galaxy.pl $input $output $secondoutput $value </command>
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4 <inputs>
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5 <param format="gff" name="input" type="data" label="FIMO file"/>
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6 <param name="value" size="3" type="integer" value="20" label="Overlap value"/>
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7 </inputs>
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8 <outputs>
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9 <data format="gff" name="output" label="positive_strand" />
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10 <data format="gff" name="secondoutput" label="negative_strand" />
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11 </outputs>
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12 </tool>