Mercurial > repos > amadeo > amadeo
diff Tools/Motif_search/motif_search_galaxy.xml @ 3:b30ba2b06326 draft
Uploaded
| author | amadeo |
|---|---|
| date | Mon, 05 Sep 2016 06:01:48 -0400 |
| parents | 229d36377838 |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Tools/Motif_search/motif_search_galaxy.xml Mon Sep 05 06:01:48 2016 -0400 @@ -0,0 +1,15 @@ +<tool id="motif_searcher" name="Motif search" version="1.0.0"> + <description>tool to compare contigous motifs in gff file and, in case that two overlap, remove the motif with the highest p value</description> + <command interpreter="perl">motif_search_galaxy.pl $input $output $motif1 $motif2 $motif3 $motif4 $motif5</command> + <inputs> + <param format="gff" name="input" type="data" label="FIMO file"/> + <param name="motif1" size="8" type="text" value="#" label="Motif 1"/> + <param name="motif2" size="8" type="text" value="#" label="Motif 2"/> + <param name="motif3" size="8" type="text" value="#" label="Motif 3"/> + <param name="motif4" size="8" type="text" value="#" label="Motif 4"/> + <param name="motif5" size="8" type="text" value="#" label="Motif 5"/> + </inputs> + <outputs> + <data format="gff" name="output" label="motif_search_output" /> + </outputs> +</tool>