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view Tools/Motif_search/motif_search_galaxy.xml @ 3:b30ba2b06326 draft

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author amadeo
date Mon, 05 Sep 2016 06:01:48 -0400
parents 229d36377838
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<tool id="motif_searcher" name="Motif search" version="1.0.0">
	<description>tool to compare contigous motifs in gff file and, in case that two overlap, remove the motif with the highest p value</description>
	<command interpreter="perl">motif_search_galaxy.pl $input $output $motif1 $motif2 $motif3 $motif4 $motif5</command>
	<inputs>
		<param format="gff" name="input" type="data" label="FIMO file"/>
		<param name="motif1" size="8" type="text" value="#" label="Motif 1"/>
		<param name="motif2" size="8" type="text" value="#" label="Motif 2"/>
		<param name="motif3" size="8" type="text" value="#" label="Motif 3"/>
		<param name="motif4" size="8" type="text" value="#" label="Motif 4"/>
		<param name="motif5" size="8" type="text" value="#" label="Motif 5"/>
	</inputs>
	<outputs>
		<data format="gff" name="output" label="motif_search_output" />
	</outputs>
</tool>