comparison tool1/tool1.xml @ 0:9cc0f9a8912e draft default tip

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0:9cc0f9a8912e

<tool id="tool1" name="tool1" version="0.01">
<description>grep command</description>

<command interpreter="python">

            tool1.py --script_path "$runMe" --interpreter "python" 
                --tool_name "tool1"
                
                 --output_dir "./" --output_tab "$output1"
            
</command>
<inputs>
<param name="job_name" type="text" size="60" label="Supply a name for the outputs to remind you what they contain" value="tool1"/> 


</inputs>
<outputs>
 <data format="ab1" name="output1" label="${job_name}"/>

</outputs>
<configfiles>
<configfile name="runMe">
 import re
 hand = open('/home/guest/word.txt')
 for line in hand:
     line = line.rstrip()
     if re.search('is', line) :
         print line
</configfile>
</configfiles>
<tests>

            <test>
            
            <param name="job_name" value="test1"/>
            <param name="runMe" value="$runMe"/>
            <output name="output1="tool1_test1_output.xls" ftype="tabular"/>
            
            </test>
            
</tests>
<help>


get the line.

**Script**
Pressing execute will run the following code over your input file and generate some outputs in your history::


   import re
 hand = open('/home/guest/word.txt')
 for line in hand:
     line = line.rstrip()
     if re.search('is', line) :
         print line

**Attribution**
This Galaxy tool was created by [e-mail] at 13/04/2016 19:49:50
using the Galaxy Tool Factory.

See https://bitbucket.org/fubar/galaxytoolfactory for details of that project
Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team. 
Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573


This tool was autogenerated from a user provided script using the Galaxy Tool Factory 2
https://toolshed.g2.bx.psu.edu/view/fubar/tool_factory_2
</help>
<citations>
    
    <citation type="doi">10.1093/bioinformatics/bts573</citation>
</citations>
</tool>